DC887604

Overview
NameDC887604
Unique NameDC887604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4979_ARATH (UPF0497 membrane protein At2g36100 OS=Arabidopsis thaliana GN=At2g36100 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = -2
Query:  149 YSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 493
            Y DL AF+Y V A  + A Y +LS    I ++ RP  ++        D L+  L  +A A +  + YL   G+ +  W  +C  FG FC     +V+   +A+  ++VL +IS+  L
Sbjct:   87 YDDLPAFQYFVIAVAVVASYLVLSLPFSIVSIVRPHAVAPRLILLICDTLVVTLNTSAAAAAASITYLAHNGNQSTNWLPICQQFGDFCQNVSTAVVADSIAILFFIVLIIISAIAL 203          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4972_VITVI (UPF0497 membrane protein 2 OS=Vitis vinifera GN=GSVIVT00021563001 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 36/118 (30.51%), Postives = 59/118 (50.00%), Query Frame = -2
Query:  149 SYSDLGAFRYLVHANGICAGYSLLSA--IIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 496
            S+ DL AF + V A  I +GY  LS    + ++ RP            D ++  L  A  A +T ++YL   GD +  W A+C  F  FC     +V+ +F+AV  +++L ++S+  L
Sbjct:   89 SFDDLPAFMFFVVATAIASGYLALSLPFSLVSIFRPHAQGIRLLLIISDTVMLALTTAGAASATAIVYLAHNGDSSANWIAICQQFTDFCQSVSGAVVASFIAVVIFMLLVMMSALAL 206          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4971_PICSI (UPF0497 membrane protein 1 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 34/122 (27.87%), Postives = 63/122 (51.64%), Query Frame = -2
Query:  140 SLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPR-PSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKLFSK 502
            S  Y    AF + V AN +  GY+LLS I +   +  ST    +     D ++  L+ A  + +  + Y+  KG+    W  VCG +  FCH    +++ +FV++  ++VL+++S+Y  + +
Sbjct:   75 SAKYQYSPAFVFFVIANAVACGYTLLSLIFSITGKFTSTPLSVFLLSVTDLVMVALVSAGVSAAAAIAYVGYKGNSHTQWGKVCGIYDRFCHHGAGAIVASFVSLIIFMVLTVMSTYSFYRR 196          
BLAST of DC887604 vs. ExPASy Swiss-Prot
Match: U4973_VITVI (UPF0497 membrane protein 3 OS=Vitis vinifera GN=GSVIVT00020996001 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 35/117 (29.91%), Postives = 60/117 (51.28%), Query Frame = -2
Query:  149 YSDLGAFRYLVHANGICAGYSLLSAIIAAMP--RPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGSFGGFCHKAIASVIITFVAVACYVVLSLISSYKL 493
            Y DL  F + V AN I +GY +LS  ++ +   R    +      F D  +  L+ AA + ++ ++YL  KG+    W A+C  F  FC +   S+I +F  +  +++L L+S+  L
Sbjct:   67 YDDLPTFTFFVIANSIVSGYLVLSLPMSILHIVRSGARASRIVLIFFDTAMLALLTAAASAASAIVYLAHKGNAQANWFAICQQFKSFCERISGSLIGSFGGIILFILLVLLSAVAL 183          
The following BLAST results are available for this feature:
BLAST of DC887604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
U4979_ARATH7.422e-1130.77UPF0497 membrane protein At2g36100 OS=Arabidopsis ... [more]
U4972_VITVI7.422e-1130.51UPF0497 membrane protein 2 OS=Vitis vinifera GN=GS... [more]
U4971_PICSI7.422e-1127.87UPF0497 membrane protein 1 OS=Picea sitchensis PE=... [more]
U4973_VITVI9.693e-1129.91UPF0497 membrane protein 3 OS=Vitis vinifera GN=GS... [more]

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Properties
Property NameValue
Genbank descriptionDC887604 EIC Citrus sinensis cDNA clone EIC0619 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887604 ID=DC887604; Name=DC887604; organism=Citrus sinensis; type=EST; length=653bp
ATGCATTAACACAAACAAGCACTTGCATGGAGTAACTTGAGCAAACACAA
TATATCGCATCAAACTGAGTGAGCGATCATCAGCCATGGAAGGCGGCAAC
CTCAATATTCTTGCCCGAGCAGGCGATAGGCGCGTCGTATTTGCTGAAGA
GTTTATAAGAGGAGATGAGCGAAAGAACAACATAGCAAGCCACTGCAACA
AATGTAATTATCACTGATGCTATAGCTTTATGACAGAATCCACCAAATGA
ACCACAGACTGCGCTCCAAGTGATGGCTAAATCTCCCTTGCGTTCCAGGT
ACAGCACCTCCGTCGACACGGCTCCAGCCGCCAGAATCAAGTAAGTGAGC
AACTGATCAAGGAAAAAGAAAGTCCAGGCTTGAGACATGGTGGAGGGACG
AGGCATGGCTGCAATAATTGCTGAAAGAAGCGAATAGCCTGCACAAATGC
CATTGGCATGCACTAAATACCTGAAGGCTCCAAGGTCGGAGTAAGAAAGA
GAGCCAAAGTCACTAGTCTCAGAGTTCTTAAGCATGAGCACAAGTGCAGC
AACACAGAGAGCCATTGGCACCAAACGTGCAATGGGCTCAGCTGTGCGCA
AGGCAGCGTTGCCATCCTCATTGATCTCTTGATGAGCCCTCGATCCCATC
ATT
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