DC887602

Overview
NameDC887602
Unique NameDC887602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 4.703e-33
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            ESI+G KF DENF +KHTGPG+LSMAN G  TNGSQFF+CT KT WLDGKHVVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:   83 ESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            ESIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+CT  T WLDG HVVFGQV +GM VVK IEK+GS SG   K V IADCG+L
Sbjct:  101 ESIYGNKFKDENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.976e-31
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYG+KF DENF  KHTG GILSMANAG  TNGSQFF+CT KT WLD KHVVFG+VVEG+DVVK IE  GS SG+T+K +++A+ G L
Sbjct:  139 KSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  244 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 507
            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   76 KSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  244 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 507
            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  212 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30
Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYG+KFADENFVK+H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +G+D+VK IE  GS SG T+K +VI + GQL
Sbjct:   74 KSIYGTKFADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.185e-30
Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 507
            +S+YG  F DENF   H GPG+LSMANAGP TNGSQFF+CT KT WLDG+HVVFGQV+EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:  165 KSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 60/79 (75.95%), Postives = 67/79 (84.81%), Query Frame = -1
Query:  271 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 507
            +SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:  119 KSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  244 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 507
            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  212 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  184 KSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
The following BLAST results are available for this feature:
BLAST of DC887602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
CYP2_CAEEL4.703e-3371.91Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CYP1_CAEEL1.368e-3274.16Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIA_DROME1.976e-3169.66Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PAL4A_HUMAN9.807e-3167.05Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIE_HUMAN2.185e-3065.91Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIA_CANAL2.185e-3067.42Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
CP20B_ARATH2.185e-3068.89Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIF_BOVIN2.853e-3075.95Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_PONAB2.853e-3065.91Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_SCHMA3.727e-3065.17Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]

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Properties
Property NameValue
Genbank descriptionDC887602 EIC Citrus sinensis cDNA clone EIC0616 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887602 ID=DC887602; Name=DC887602; organism=Citrus sinensis; type=EST; length=543bp
GTTTACAGACAGCCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACAT
AAAAAACAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAAC
AAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACG
GCCACATAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGG
CTCGTGATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCG
CAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCAC
TTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACA
CAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAAC
TGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGG
GCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGA
TTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCC
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