DC887602

Overview
NameDC887602
Unique NameDC887602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  244 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 507
            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG+V EG+DV++ IE  GS  G+  + V+IADCG+
Sbjct:  212 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  244 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 507
            +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+C AKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADCGQ
Sbjct:   76 KSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYG KF DENF  +H G G+LSMAN+GP TNGSQFF+CT K +WLDGKHVVFG+VV+G +VVK +E VGS SG+  +PV I+ CG+L
Sbjct:   90 KSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYG+KF DENF  KHTGPG LSMANAGP TNGSQFF+ T K  WLDGKHVVFG+V EGMDVV+ IE +GS +G     ++I +CGQL
Sbjct:   76 KSIYGNKFRDENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = -1
Query:  244 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 507
            +SIYG KF DENF+ KHTGPG+LSMAN+GP TNGSQFF+   KT+WLDGKHVVFG++ +G+DV++ IE  GS  G+  + V+I+DCG+
Sbjct:  212 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYGSKF DENF  KH+ P +LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V  G DVVK +E VGSSSG+T++ V+I DCGQL
Sbjct:   74 KSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 59/89 (66.29%), Postives = 71/89 (79.78%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYGSKFADENFVKKH   G+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:   94 KSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = -1
Query:  247 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 507
            +SIYG KF DENF  KH  PG+LSMANAGP TNGSQFF+ T  T WLDGKHVVFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:   74 KSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYPH_UROFA (Peptidyl-prolyl cis-trans isomerase OS=Uromyces fabae GN=PIG28 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKVGSSSGRTNKPVVIADCGQL 507
            ESIYG KF DENF KKH   G+LSMANAGP TNGSQFF+   KT WLDGKHVVFG+V+EG D VVKA+EK GS SG+T+  + I DCG L
Sbjct:   74 ESIYGKKFEDENFQKKHVERGMLSMANAGPNTNGSQFFITVTKTPWLDGKHVVFGKVIEGYDQVVKAMEKTGSQSGKTSSVLKIEDCGTL 163          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            ESIYG KFADENF  KHTGPG+LSMAN+G  TNGSQFF+ T  T WLDG+HVVFG+VV+GMDVV  IE  G  SG     VVIAD G+L
Sbjct:  111 ESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
The following BLAST results are available for this feature:
BLAST of DC887602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PPIE_MOUSE3.727e-3065.91Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PAL4B_HUMAN3.727e-3065.91Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
PPIE_SCHJA8.302e-3065.17Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPIA1_RHIOR8.302e-3067.42Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
PPIE_BOVIN1.416e-2962.50Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIA_ECHGR2.416e-2969.66Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
CYPC_YEAST2.416e-2966.29Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
CYPH_SCHPO3.155e-2967.82Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CYPH_UROFA4.120e-2968.89Peptidyl-prolyl cis-trans isomerase OS=Uromyces fa... [more]
CP19D_ARATH4.120e-2968.54Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887602 EIC Citrus sinensis cDNA clone EIC0616 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887602 ID=DC887602; Name=DC887602; organism=Citrus sinensis; type=EST; length=543bp
GTTTACAGACAGCCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACAT
AAAAAACAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAAC
AAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACG
GCCACATAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGG
CTCGTGATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCG
CAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCAC
TTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACA
CAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAAC
TGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGG
GCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGA
TTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCC
back to top