DC887602

Overview
NameDC887602
Unique NameDC887602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.179e-29
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 507
            +SIYG +FADENF  +HTGPGILSMANAG  TNGSQFF+ T  T WLDG+HVVFG+V+EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:  102 KSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.045e-28
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            ESIYG KFADENF  KH  PG+LSMANAGP TNGSQFF+      WLDGKHVVFG+VVEG+++++ +E  GS SG+T + +VI+DCG++
Sbjct:   82 ESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.671e-28
Identity = 60/89 (67.42%), Postives = 66/89 (74.16%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            ESIYG KFADENF  KHTGPG LSMANAG  TNGSQFF+ T  T WLDG+HVVFG+VV GMDVV  +E  G+ SG     VVI D G+L
Sbjct:  114 ESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.488e-28
Identity = 64/92 (69.57%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 507
            ESIYG+KFADENF+ KHT PG+LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+VVEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:   80 ESIYGAKFADENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            ESIYG KF DENF  KH+ PG+LSMANAGP TNGSQFF+ T  T WLDG+H VFG+V+EGMD+VK +E +GS SG  +K   I++ G+L
Sbjct:  109 ESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 507
            +SIYGSKF DENF  KHTGPG+LSMANAG  TNGSQFF+CT KT WLD +HVVFG V+EGMDVV A+E V +S G +  +P+ IA  G+L
Sbjct:  123 KSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.771e-28
Identity = 63/93 (67.74%), Postives = 69/93 (74.19%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAIEKVGSSSG--RTNKPVVIADCGQL 507
            +SIYG KFADENF KKH  PG+LSMANAGP TNGSQFFV T  T WLDG+HVVFG+V   E M VVKA+E  GSSSG  R +K   I DCG L
Sbjct:  131 KSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCGAL 223          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYG KF DENF K H  PG+LSMANAGP TNGSQFF+ T    WLDGKHVVFG+VV+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:   74 KSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.261e-27
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = -1
Query:  238 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQLS 507
            +SIYGS+F DENF  +HT PG+LSMANAGP +NGSQFF+ T  T WLDGKHVVFG+V+EGMDVV  IEK  ++   + N  VVIADCG LS
Sbjct:  106 KSIYGSRFPDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCGLLS 196          
BLAST of DC887602 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = -1
Query:  241 ESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 507
            +SIYG KFADENF  KH+ PG+LSMANAGP TNGSQFF+ T    WLDG HVVFG+V + M++V  IE +GS+SG     VVI DCG L
Sbjct:   73 KSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
The following BLAST results are available for this feature:
BLAST of DC887602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PPIB_ORPSP9.179e-2967.78Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPI2_SYNY32.045e-2862.92Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CP20A_ARATH2.671e-2867.42Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CYPX_USEUD3.488e-2869.57Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIB_DICDI5.950e-2862.92Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIB_CRYNE5.950e-2866.67Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYPH_NEUCR7.771e-2867.74Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
CYPH_YEAST1.325e-2762.92Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIB2_RHIOR2.261e-2765.93Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
PPIA2_RHIOR8.591e-2762.92Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]

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Properties
Property NameValue
Genbank descriptionDC887602 EIC Citrus sinensis cDNA clone EIC0616 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887602 ID=DC887602; Name=DC887602; organism=Citrus sinensis; type=EST; length=543bp
GTTTACAGACAGCCCTATCTTATTTAAAAAGGCAGCTCATAGAAAGACAT
AAAAAACAGTTCATCAAGAACCACCACCGGAGACCCGATCCAACCCGAAC
AAGTAACATAGCAGGAAAATTAGATAAAGATTAAAAGTCCTACAGACACG
GCCACATAATAATAGATAACATAATCACCATCACGATCGCGATCAGACGG
CTCGTGATGATGGCGATCATTATCATGATCAAATCTAAGACAATTGACCG
CAATCAGCGATCACGACGGGCTTGTTGGTCCTTCCGGAGCTGGACCCCAC
TTTCTCGATGGCCTTGACGACGTCCATTCCTTCGACGACTTGACCGAACA
CAACGTGCTTCCCATCGAGCCACTCGGTCTTGGCCGTACAGACGAAGAAC
TGAGATCCGTTGGTTCCGGGTCCGGCATTCGCCATGGAGAGGATTCCGGG
GCCGGTGTGCTTCTTCACGAAGTTCTCATCGGCGAATTTTGAGCCGTAGA
TTGATTCGCCTCCGGTTCCGTTTCCGGCGGTGAAGTCTCCCCC
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