DC887601

Overview
NameDC887601
Unique NameDC887601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.729e-13
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY IS STDCSRV
Sbjct:   64 AARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.564e-13
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            A+TT DRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   62 AKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.564e-13
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA TT DRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   63 AANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.655e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA TT DRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   63 AANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.079e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA+TT  RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   66 AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.079e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA+TT  RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   62 AAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.939e-13
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AA TT DR+ ACNCLK A   I+GI    AAGLP  CGV IPY ISPST+C+ V
Sbjct:   63 AAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   64 AASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   63 AATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   64 AASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of DC887601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
NLTP1_SORBI2.729e-1364.81Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP_PYRCO3.564e-1357.41Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP6_LENCU3.564e-1363.64Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU4.655e-1361.82Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP2_GOSHI6.079e-1361.82Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI6.079e-1361.82Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_SPIOL7.939e-1362.96Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP2_ORYSI1.354e-1261.11Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ1.354e-1261.11Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ1.354e-1261.11Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionDC887601 EIC Citrus sinensis cDNA clone EIC0615 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887601 ID=DC887601; Name=DC887601; organism=Citrus sinensis; type=EST; length=341bp
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAAC
ATAGATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCANGGGTGGTTCTGGCGGCGC
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