DC887601

Overview
NameDC887601
Unique NameDC887601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.769e-12
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA TT DRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   62 AANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.769e-12
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA TT DRQAACNCLK A G I  + P  AA LP +C V IPYKIS +T+C+ ++
Sbjct:   63 AAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.310e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            A+TT DRQ AC CLK A  +  G+    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   61 AQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA TT DRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:   61 AAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 34/55 (61.82%), Postives = 36/55 (65.45%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   66 AARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.721e-12
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:   37 SATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKISPSTDCSRVR 336
            A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKISPSTDC  ++
Sbjct:   68 AQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            A+TT DRQAAC CLK A  +   +    AA LPS C V IPYKISPSTDCS+V+
Sbjct:   61 AQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   62 AASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.778e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AA TT DR+ ACNCLK A   I+G+    AA +PS+CGV +PY IS S DCSRV
Sbjct:   62 AASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of DC887601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
NLTP5_LENCU1.769e-1260.00Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP3_LENCU1.769e-1258.18Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP2_SOLPN2.310e-1261.11Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP_CICAR3.017e-1261.82Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP6_GOSHI3.017e-1261.82Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP3_VITSX6.721e-1259.26Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP3_PRUDU8.778e-1258.93Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_SOLCI8.778e-1261.11Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP1_ORYSJ8.778e-1259.26Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI8.778e-1259.26Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionDC887601 EIC Citrus sinensis cDNA clone EIC0615 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887601 ID=DC887601; Name=DC887601; organism=Citrus sinensis; type=EST; length=341bp
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAAC
ATAGATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCANGGGTGGTTCTGGCGGCGC
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