DC887601

Overview
NameDC887601
Unique NameDC887601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  178 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:   37 SAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.336e-11
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  178 AARTTXDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 339
            AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DCSRV
Sbjct:   39 AARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.690e-11
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  175 ARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 336
            A+TT DRQ AC C++    +I G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   62 AKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   64 AAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   64 AAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of DC887601 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = -3
Query:  175 AARTTXDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 339
            AA++T D+QAAC C+K A G   G+    AAG+PS CGV +PY IS S DCS++R
Sbjct:   64 AAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of DC887601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
NLTP5_VITSX1.497e-1157.41Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP_ELECO3.336e-1158.18Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP3_ARATH5.690e-1150.00Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLT43_HORVU7.431e-1154.55Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU7.431e-1154.55Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLT41_HORVU7.431e-1154.55Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionDC887601 EIC Citrus sinensis cDNA clone EIC0615 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887601 ID=DC887601; Name=DC887601; organism=Citrus sinensis; type=EST; length=341bp
CGCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACA
TGAGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAAC
ATAGATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAG
TCACAGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGG
GGCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCG
GCAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCA
GTTGCATGCAGCTTGGCGGTCANGGGTGGTTCTGGCGGCGC
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