DC887599

Overview
NameDC887599
Unique NameDC887599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.370e-30
Identity = 52/106 (49.06%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  271 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 588
            +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:  126 EEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          

HSP 2 Score: 32.3426 bits (72), Expect = 1.370e-30
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = -2
Query:  599 LIEENALGVRNAAQRKLLDELGICAED 679
            L E +ALGVR AAQR+L  ELGI  E+
Sbjct:   96 LEENDALGVRRAAQRRLKAELGIPLEE 122          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.939e-30
Identity = 54/112 (48.21%), Postives = 82/112 (73.21%), Query Frame = -3
Query:  271 LKMCQFDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 606
            L+    +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:  120 LEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227          

HSP 2 Score: 30.4166 bits (67), Expect = 3.939e-30
Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = -2
Query:  599 LIEENALGVRNAAQRKLLDELGICAED 679
            L E +A+GV+ AAQR+L  ELGI  E+
Sbjct:   96 LEENDAMGVKRAAQRRLKAELGIPLEE 122          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.939e-30
Identity = 52/106 (49.06%), Postives = 81/106 (76.42%), Query Frame = -3
Query:  271 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 588
            +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:  126 EEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227          

HSP 2 Score: 32.3426 bits (72), Expect = 3.939e-30
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = -2
Query:  599 LIEENALGVRNAAQRKLLDELGICAED 679
            L E +ALGVR AAQR+L  ELGI  E+
Sbjct:   96 LEESDALGVRRAAQRRLKAELGIPLEE 122          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 5.516e-29
Identity = 51/106 (48.11%), Postives = 78/106 (73.58%), Query Frame = -3
Query:  271 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 588
            +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:  126 EEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227          

HSP 2 Score: 31.5722 bits (70), Expect = 5.516e-29
Identity = 16/27 (59.26%), Postives = 20/27 (74.07%), Query Frame = -2
Query:  599 LIEENALGVRNAAQRKLLDELGICAED 679
            L E +A+GVR AAQR+L  ELGI  E+
Sbjct:   96 LEENDAIGVRRAAQRRLKAELGIPMEE 122          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.071e-22
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  316 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWW---DHLEK 588
            D+F  L RI Y APS G WGEHE+DY+LF    V ++ NP+EV  YKYV  E+LKE+      G      +PWF+L+ ++F+FKWW   DH  K
Sbjct:  130 DKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHASK 218          

HSP 2 Score: 30.0314 bits (66), Expect = 4.071e-22
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = -2
Query:  602 IEENALGVRNAAQRKLLDELGICAE 676
            + E   GV+NAAQRKL  ELGI A+
Sbjct:  101 LPEAVEGVKNAAQRKLFHELGIQAK 125          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.333e-21
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = -3
Query:  268 DEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHL-----EKGTLNEVIDMKTIHKLT 588
            D FT L RI Y APSDG WGEHE+DY+LF         NP+EV++ +YV + +L+ +       +E    +PWF+L+  +FLF WWD L     EKG     +D K++  L+
Sbjct:  142 DSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE-----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGE----VDAKSLEDLS 244          

HSP 2 Score: 30.8018 bits (68), Expect = 3.333e-21
Identity = 14/21 (66.67%), Postives = 16/21 (76.19%), Query Frame = -2
Query:  611 EENALGVRNAAQRKLLDELGI 673
            EEN +GVR AA RKL  ELG+
Sbjct:  114 EENQIGVRRAASRKLEHELGV 134          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.337e-21
Identity = 45/115 (39.13%), Postives = 76/115 (66.09%), Query Frame = -3
Query:  274 LKMCQFDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVID-MKTIHK 606
            L     D+FT + +I YK+ S  D +WGEHE+D++L + +D +++N  P+EV +YKYV++E+L +L +  D G+  +K++PWFRL+  N L  WW++L    L  +++   TIH+
Sbjct:  128 LDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQLFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL--NNLKPLVEPTNTIHR 238          

HSP 2 Score: 31.9574 bits (71), Expect = 3.337e-21
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = -2
Query:  611 LIEENALGVRNAAQRKLLDELGI 679
            L+EENA GV+ AA+RKL  ELG+
Sbjct:  104 LVEENAQGVKIAAKRKLNHELGV 126          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.106e-20
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = -3
Query:  271 YKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 558
            +KA SD  WGEHE+ YLL + ++V++NP+P E     Y+++E+L ELL +   GE  +K++PW R + + FL++WW HL+  T    +++  IH++
Sbjct:  136 HKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 227          

HSP 2 Score: 31.5722 bits (70), Expect = 2.106e-20
Identity = 16/26 (61.54%), Postives = 20/26 (76.92%), Query Frame = -2
Query:  602 LIEENALGVRNAAQRKLLDELGICAE 679
            L E++A+GVR AAQR+L  ELGI  E
Sbjct:   96 LEEKDAIGVRRAAQRRLQAELGIPGE 121          
BLAST of DC887599 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = -3
Query:  271 EFTPLGRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 585
            +F  L RI Y APS+  WGEHE+DY+LF       +++VNPN +EV ++K+V+   LK +       +   K +PWF+++ +N+LF WW+ L+   L+EV + + IH++
Sbjct:  186 KFHFLNRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICENYLFNWWEQLD--DLSEVENDRQIHRM 287          
The following BLAST results are available for this feature:
BLAST of DC887599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDI1_PONAB1.370e-3049.06Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_RAT3.939e-3048.21Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_HUMAN3.939e-3049.06Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
IDI1_BOVIN5.516e-2948.11Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_SCHPO4.071e-2247.87Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI1_PHARH3.333e-2141.07Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI_DICDI3.337e-2139.13Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI2_HUMAN2.106e-2039.58Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_YEAST7.427e-1738.53Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionDC887599 EIC Citrus sinensis cDNA clone EIC0613 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887599 ID=DC887599; Name=DC887599; organism=Citrus sinensis; type=EST; length=680bp
CCCCCCCCCCCCGNTATGTAATGTCAAAATTACAAACTTAACAATAAAAT
TCCATAAAAGCAGCACATACNAAAAGATAAGGTAACGTCAACAACAAAAT
GCTAATCTGTGTAGAACTCTCGCATATCCAAATTTATTGGAATAAAGAAA
CCGGTGAGAAGATACTGTGTACCCTTAATGTCTTGAAGAACTCTCAAATG
CCCAAACTTATTGGAATACAGGTTCCGGCACACAAATACTGTGTTTCAAG
GGCCTGCGGCTTTATTAAGTCAACTTGTGAATGGTCTTCATGTCAATGAC
TTCGTTAAGGGTACCTTTTTCGAGGTGATCCCACCACTTGAACAAGAAAT
TGTCCACAACCAGTCTGAACCAAGGAGACAGCTTCAAACCTTCTTCTCCA
GCATCTGCTTTCCTCAAAAGCTCTTTTAACTGTTCCCGGTTGACATATTT
ATACTCGGCTACTTCATCAGGATTTGGGTTAACACTAACATCTCGGACAA
TGAAAAGTAAGTAGTCAAGTTCATGCTCCCCCCACTTGCCATCAGAAGGG
GCCTTGTACAGAATGCGACCCAGTGGAGTGAACTCATCAAACTGGCACAT
CTTCAGCACAAATGCCCAGCTCATCCAAAAGCTTTCTTTGTGCAGCATTC
CTCACCCCAAGAGCGTTCTCCTCAATAAGC
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