DC887598

Overview
NameDC887598
Unique NameDC887598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -3 
Query:  170 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 391
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -3 
Query:  170 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 391
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -3 
Query:  170 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 391
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = -3 
Query:  170 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLY
Sbjct:   40 QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLY 115
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.012e-28
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = -3 
Query:  182 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 403
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.167e-27
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = -3 
Query:  170 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 397
            +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLY
Sbjct:   29 KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLY 104
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.755e-26
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = -3 
Query:  173 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 403
            VL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   22 VLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98
The following BLAST results are available for this feature:
BLAST of DC887598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_TETTH1.247e-2986.49Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY1.247e-2986.49Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY1.247e-2986.49Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H4_ENTHI3.629e-2981.58Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H42_BLEJA4.012e-2881.33Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4_DICDI1.167e-2781.58Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H4G_HUMAN3.755e-2681.82Histone H4-like protein type G OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887598 EIC Citrus sinensis cDNA clone EIC0612 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887598 ID=DC887598; Name=DC887598; organism=Citrus sinensis; type=EST; length=582bp
AGAANGTTCTATATTGCCTCAAATATAAAGATAAGATTTAACTTGATAGA
ATTACAAAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCTACCAG
ATCAAGATCTAGAGTCAAGATCTATTAACATTCAATTCCAGAACCCTAAG
ACAATTAACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGAGAGCG
TAAACGACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCAGTGTA
GGTCACGGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGACGCCAC
GTGTCTCCTCGTAGATCAAGCCACTGATACGCTTGACTCCACCTCTACGA
GCCAAACGCCGGATTGCTGGCTTTGTGATACCCTGAATGTTATCGCGAAG
CACCTTACGGTGACGCTTGGCGCCTCCTTTTCCCAATCCCTTGCCTCCCT
TACCGCGCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGCTGTTC
CTTGAAAGAGAATTTGGATAGAGAAATTTGAATGTGCCTTGATTAGTTGC
TTGCTTTGGTCCCCGGCCGGAATGGCCGAATT
back to top