DC887598

Overview
NameDC887598
Unique NameDC887598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_RAT (Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_PONAB (Histone H4 OS=Pongo abelii PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_PLADU (Histone H4 OS=Platynereis dumerilii PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_PIG (Histone H4 OS=Sus scrofa PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ORENI (Histone H4 OS=Oreochromis niloticus PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ONCMY (Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_MYTTR (Histone H4 OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_MYTGA (Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_MYTED (Histone H4 OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_MYTCH (Histone H4 OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of DC887598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_RAT2.347e-3697.44Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 S... [more]
H4_PONAB2.347e-3697.44Histone H4 OS=Pongo abelii PE=3 SV=1[more]
H4_PLADU2.347e-3697.44Histone H4 OS=Platynereis dumerilii PE=1 SV=2[more]
H4_PIG2.347e-3697.44Histone H4 OS=Sus scrofa PE=1 SV=2[more]
H4_ORENI2.347e-3697.44Histone H4 OS=Oreochromis niloticus PE=3 SV=2[more]
H4_ONCMY2.347e-3697.44Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H4_MYTTR2.347e-3697.44Histone H4 OS=Mytilus trossulus PE=3 SV=3[more]
H4_MYTGA2.347e-3697.44Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3[more]
H4_MYTED2.347e-3697.44Histone H4 OS=Mytilus edulis PE=3 SV=3[more]
H4_MYTCH2.347e-3697.44Histone H4 OS=Mytilus chilensis PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC887598 EIC Citrus sinensis cDNA clone EIC0612 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887598 ID=DC887598; Name=DC887598; organism=Citrus sinensis; type=EST; length=582bp
AGAANGTTCTATATTGCCTCAAATATAAAGATAAGATTTAACTTGATAGA
ATTACAAAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCTACCAG
ATCAAGATCTAGAGTCAAGATCTATTAACATTCAATTCCAGAACCCTAAG
ACAATTAACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGAGAGCG
TAAACGACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCAGTGTA
GGTCACGGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGACGCCAC
GTGTCTCCTCGTAGATCAAGCCACTGATACGCTTGACTCCACCTCTACGA
GCCAAACGCCGGATTGCTGGCTTTGTGATACCCTGAATGTTATCGCGAAG
CACCTTACGGTGACGCTTGGCGCCTCCTTTTCCCAATCCCTTGCCTCCCT
TACCGCGCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGCTGTTC
CTTGAAAGAGAATTTGGATAGAGAAATTTGAATGTGCCTTGATTAGTTGC
TTGCTTTGGTCCCCGGCCGGAATGGCCGAATT
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