DC887598

Overview
NameDC887598
Unique NameDC887598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.347e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_DENKL (Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.065e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.065e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 4.003e-36
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.165e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.165e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of DC887598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_ASEAQ2.347e-3697.44Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]
H4_ACRAS2.347e-3697.44Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H4_DENKL3.065e-3696.15Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL... [more]
H4_ACRFO3.065e-3696.15Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H43_MAIZE4.003e-3698.72Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL5.227e-3696.15Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA5.227e-3697.44Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI5.227e-3696.15Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_STRPU1.165e-3596.15Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE1.165e-3596.15Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887598 EIC Citrus sinensis cDNA clone EIC0612 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887598 ID=DC887598; Name=DC887598; organism=Citrus sinensis; type=EST; length=582bp
AGAANGTTCTATATTGCCTCAAATATAAAGATAAGATTTAACTTGATAGA
ATTACAAAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCTACCAG
ATCAAGATCTAGAGTCAAGATCTATTAACATTCAATTCCAGAACCCTAAG
ACAATTAACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGAGAGCG
TAAACGACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCAGTGTA
GGTCACGGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGACGCCAC
GTGTCTCCTCGTAGATCAAGCCACTGATACGCTTGACTCCACCTCTACGA
GCCAAACGCCGGATTGCTGGCTTTGTGATACCCTGAATGTTATCGCGAAG
CACCTTACGGTGACGCTTGGCGCCTCCTTTTCCCAATCCCTTGCCTCCCT
TACCGCGCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGCTGTTC
CTTGAAAGAGAATTTGGATAGAGAAATTTGAATGTGCCTTGATTAGTTGC
TTGCTTTGGTCCCCGGCCGGAATGGCCGAATT
back to top