DC887598

Overview
NameDC887598
Unique NameDC887598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_LITVA (Histone H4 OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.746e-34
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKR   TLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRXXXTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_APIME (Histone H4 OS=Apis mellifera PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.746e-34
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEH +RKTVTAMDVVYALK QGRTLY
Sbjct:   22 VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_TRICD (Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 4.893e-34
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            VLRDNIQGITKPAIRRLARRGGVKRIS LIYEETRGVLK+FLENVIRDAVTYTEHA+  TVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISSLIYEETRGVLKVFLENVIRDAVTYTEHAKIPTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_NEUCR (Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ASPOR (Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H4_ASPFU (Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H42_PENFN (Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H42_EMENI (Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H41_PENFN (Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
[Close]
BLAST of DC887598 vs. ExPASy Swiss-Prot
Match: H41_EMENI (Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.859e-33
Identity = 70/78 (89.74%), Postives = 75/78 (96.15%), Query Frame = -3 
Query:  170 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 403
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLY
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of DC887598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_LITVA3.746e-3493.59Histone H4 OS=Litopenaeus vannamei PE=1 SV=2[more]
H4_APIME3.746e-3493.59Histone H4 OS=Apis mellifera PE=3 SV=3[more]
H4_TRICD4.893e-3493.59Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3[more]
H4_NEUCR1.859e-3389.74Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2[more]
H4_ASPOR1.859e-3389.74Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3[more]
H4_ASPFU1.859e-3389.74Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 S... [more]
H42_PENFN1.859e-3389.74Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE... [more]
H42_EMENI1.859e-3389.74Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 S... [more]
H41_PENFN1.859e-3389.74Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE... [more]
H41_EMENI1.859e-3389.74Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionDC887598 EIC Citrus sinensis cDNA clone EIC0612 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887598 ID=DC887598; Name=DC887598; organism=Citrus sinensis; type=EST; length=582bp
AGAANGTTCTATATTGCCTCAAATATAAAGATAAGATTTAACTTGATAGA
ATTACAAAGCAGCAACCTAATAACAAACTACTAAGAGCCCCATCTACCAG
ATCAAGATCTAGAGTCAAGATCTATTAACATTCAATTCCAGAACCCTAAG
ACAATTAACCCCCAAATCCATAAAGAGTCCTGCCCTGCCTCTTGAGAGCG
TAAACGACGTCCATCGCGGTCACGGTCTTTCTCCTGGCGTGCTCAGTGTA
GGTCACGGCGTCACGGATGACGTTCTCCAAGAATATCTTCAGGACGCCAC
GTGTCTCCTCGTAGATCAAGCCACTGATACGCTTGACTCCACCTCTACGA
GCCAAACGCCGGATTGCTGGCTTTGTGATACCCTGAATGTTATCGCGAAG
CACCTTACGGTGACGCTTGGCGCCTCCTTTTCCCAATCCCTTGCCTCCCT
TACCGCGCCCAGACATTTTAGCGAGGAACTTAAAAGACTTTCCGCTGTTC
CTTGAAAGAGAATTTGGATAGAGAAATTTGAATGTGCCTTGATTAGTTGC
TTGCTTTGGTCCCCGGCCGGAATGGCCGAATT
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