DC887596

Overview
NameDC887596
Unique NameDC887596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.269e-28
Identity = 61/143 (42.66%), Postives = 88/143 (61.54%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+ + EVHRK+I+  ++A YMR LME++ + Y+  F +YIK G+ AD LE++YKK HA IR +P  +K  KK   + KR+N  KL+ E++K R+ ++
Sbjct:  142 FTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQYIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKK-EVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.269e-28
Identity = 62/143 (43.36%), Postives = 88/143 (61.54%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+ + EVHRK+I+  +VA YMR LME++ + Y+  F +YIK G+ AD +E+LYKK HA IR +P  +K  KK   + KR+N  KL+ E++K R+ ++
Sbjct:  142 FTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKK-EVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.165e-28
Identity = 66/141 (46.81%), Postives = 87/141 (61.70%), Query Frame = -1
Query:  209 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARL 628
            F C        TTTG RVF           +IPHS KRF G+S ++K  +A+VHR +I+  HVA YMR+L E++ E ++  F  YIK GI AD+LE++YKK H AIR DP  K + KK  A   KR+N KKLT E+RK ++
Sbjct:  142 FRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = -1
Query:  203 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPN-QKKSEKKPPAEHKRYNLKKLTYEERKARLVE 628
            F C        TTTG R+F           +IPHS KRF G+S ++K  +AEVHR +I+  HVA YMRTL E++ + Y+  F +YI  GI+AD++E +YK  HA IR DP   KK EKK     KR+NL KLT E RKA++ +
Sbjct:  142 FRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTLEEEDEDAYKRQFSKYIALGIKADDIETIYKNAHAGIRKDPAFHKKPEKK--VTKKRFNLAKLTLEARKAKIAK 282          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.126e-27
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = -1
Query:  191 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 634
            RPF          TTTGNRVF           DIPHS  RF G+ ++S QL+A+  R+YI+ GHV+ YM+ L E++ EKY++HF  +IK GI AD++E++Y+  HA IRA+P  +K + +     KR+N  K++ ++++ R+ ++  A
Sbjct:  140 RPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITADSMEQMYRDAHAKIRANPAHEKKQPRDGLVKKRWNRAKMSLKQKRDRVKQKKAA 287          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 60/129 (46.51%), Postives = 83/129 (64.34%), Query Frame = -1
Query:  248 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYN 634
            +PF C        T+TG++VF           DIPH+EKRF G++   K+LD EV +KYIY GHVA Y  T+ E+EPEKYQ+HF  Y++  IE D +E++YK+VHA IR +P   K E+  PA+ KR++
Sbjct:  140 KPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWS 266          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.097e-27
Identity = 65/143 (45.45%), Postives = 86/143 (60.14%), Query Frame = -1
Query:  203 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARLVE 628
            F C       +T+TG RVF           +IPHS KRF G+  ++K+  AE HRK+I   HVA YMR L E++ + +   F +YIK GI AD+LE +YKK H  IR+DP + +  KK  + E KR+N KKLT  ERK R+VE
Sbjct:  142 FRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEEDEDAFNRQFSQYIKLGIVADDLENMYKKAHENIRSDPKRDRKPKKDVSKEPKRWNAKKLTNAERKQRVVE 284          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  KK   + KR+N  K++  ++K R+ ++
Sbjct:  142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKK-EVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  KK   + KR+N  K++  ++K R+ ++
Sbjct:  142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKK-EVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 4.515e-26
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  K+   + KR+N  K++  ++K R+ ++
Sbjct:  142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKR-EVKKKRWNRPKMSLAQKKDRVAQK 283          
The following BLAST results are available for this feature:
BLAST of DC887596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5B_XENLA1.269e-2842.6660S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5A_XENLA1.269e-2843.3660S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_DROME2.165e-2846.8160S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_AEDAE2.394e-2746.1560S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5_SUBDO3.126e-2739.8660S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_DUNSA4.083e-2746.5160S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_TOXCI9.097e-2745.4560S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5_MACFA2.027e-2641.9660S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_HUMAN2.027e-2641.9660S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
RL5_RAT4.515e-2641.2660S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionDC887596 EIC Citrus sinensis cDNA clone EIC0608 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887596 ID=DC887596; Name=DC887596; organism=Citrus sinensis; type=EST; length=634bp
CTGGATTTCAGCAAACAACCAGGTCTCATCAGCATTTGAAAGCTCATAGA
AACAACACTGTTCTCAACCTATCAAACAAGCCAGGTTCTTTAATTTTAGT
AATCTCTGAAAATAACCTATTGAGCTAAGAAACAAAAACTTCCTAGTATC
GCATTCACTCATCGGCTTCATCGTCTTCAGCAGCATTGAGTGCTTTCAAC
CTTTCAACTAACCTGGCTTTCCTTTCCTCGTACGTCAGTTTCTTCAGGTT
GTACCTCTTGTGCTCTGCTGGAGGCTTCTTCTCAGATTTCTTCTGGTTAG
GGTCTGCACGGATGGCAGCATGTACCTTCTTGTACAACTCTTCAAGGTTA
TCAGCCTCAATACCTCTCTTGATGTATTCACAAAAGTGAGACTGGTACTT
CTCTGGCTCATCTTCCATCAAAGTCCTCATGTAGGCAGCGACATGACCAC
AATAGATGTATTTACGGTGAACTTCAGCGTCAAGTTGCTTACTATCCTTA
CTGAATCCAGCAAATCTCTTCTCACTGTGAGGGATATCAAGTCCACCATC
CAATGCACCCTTAAGAGCGCCAAAGACACGGTTACCAGTAGTTGTTTCAC
AAGACCAACATCAAGCANGGCACGGGAAAGGCCT
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