DC887596

Overview
NameDC887596
Unique NameDC887596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 4.515e-26
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  K+   + KR+N  K++  ++K R+ ++
Sbjct:  142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKR-EVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.515e-26
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+ +AEVHRK+I   +VA YMR LME++ + Y+  F +YIK  I  D +EE+YKK HAAIR +P  +K  K+   + KR N  K++  ++K R+ ++
Sbjct:  142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKR-EVKKKRVNSTKMSLAQKKDRVAQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 7.701e-26
Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = -1
Query:  200 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 628
            F C        TTTGN+VF            IPHS KRF G+  +SK+  AEVHRK+I   +VA YMR L+E++ + Y+  F +YIK  +  D +EE+YKK HAAIR +P  +K  KK   + KR+N  K++  ++K R+ ++
Sbjct:  142 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLIEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKK-EVKKKRWNRPKMSLAQKKDRVAQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.314e-25
Identity = 58/132 (43.94%), Postives = 83/132 (62.88%), Query Frame = -1
Query:  200 TTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 595
            TTTG +VF           DIPHS KRF G+  +S    AEVHR +I+ GHV+ YM+ L E++ E ++  F +YIK G+ AD +EE+Y K HAAIR DP  KK +     + KR+N KK+T+ +R+ R+ ++
Sbjct:  153 TTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPTPKK-KTDFAGKTKRWNRKKMTFSQRRDRVKQK 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = -1
Query:  209 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARL 628
            F C        TTTG RVF           +I HS KRF GF  +SK+ +A+VHR++I+  HVA YMR L E++ E Y+  F +YIK G+ AD +E LYKK H AIRA+P +K   KK   + KR+  KKLT E+R+ ++
Sbjct:  142 FRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAKKAHPK-KRWTEKKLTREQRQGKV 280          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 62/142 (43.66%), Postives = 86/142 (60.56%), Query Frame = -1
Query:  203 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVE 628
            F C        T+TG R+F           DIPHS KRF GF+ D K L+AE H+ +I+ GHV  YM  L E+  E Y+  F  +IK GI ++N+EE+YKK HAAIRADP+ K   +K   + KR+N  K++Y +R+AR+ +
Sbjct:  152 FRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEENEEAYKRQFSRFIKNGINSENIEEMYKKAHAAIRADPSPKAKVEK-TVDKKRWNRAKISYAQRRARVAQ 290          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 64/144 (44.44%), Postives = 83/144 (57.64%), Query Frame = -1
Query:  212 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP---PAEHKRYNLKKLTYEERKAR 634
            RPF          T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+ +KS K      AE  +Y  +KLT EERK R
Sbjct:  140 RPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKER 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = -1
Query:  188 PFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKAL 631
            PF          TTTG+++F           ++PHSE RF GF ++SK  +AE HR  I   HVA YM  L E++ ++Y+  F +++  G+ ADNL   Y+K HA IRADP+   S KK     KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  140 PFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEEDEDRYKRQFSKFLSNGMNADNLVATYQKAHANIRADPS--PSAKKAAKPSKRHTAKRLTYDERKQRVADK-KAL 284          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.452e-24
Identity = 63/144 (43.75%), Postives = 83/144 (57.64%), Query Frame = -1
Query:  212 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP---PAEHKRYNLKKLTYEERKAR 634
            RPF          T+TG+RVF            IPHS  RF GF  ++++LD E  RKYIY GHVA YM  L++D+ E+YQ  F   I  GIE+D LE++Y + +A IR DP+ +KS K      AE  ++  +KLT EERK R
Sbjct:  140 RPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKER 283          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 62/154 (40.26%), Postives = 87/154 (56.49%), Query Frame = -1
Query:  188 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKK-----PPAEHKRYNLKKLTYEERKARLVERLKAL 634
            RPF          TTTG RVF            +PHSE RF G+  +++++D E+ R YI+ GHV+ YM  L +D+ E++   F  Y+   I+AD+LE++Y   H AIRADP  K +EKK       AE K+Y   KL+ EER AR+  ++ AL
Sbjct:  140 RPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAAL 293          
The following BLAST results are available for this feature:
BLAST of DC887596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_MOUSE4.515e-2641.2660S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_CHICK4.515e-2641.9660S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_BOVIN7.701e-2641.2660S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5_STYCL1.314e-2543.9460S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_HELAN1.716e-2545.0060S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_OIKDI3.822e-2543.6660S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5B_SCHPO3.822e-2544.4460S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5_CAEBR6.519e-2541.2260S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5A_SCHPO1.452e-2443.7560S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_YEAST1.897e-2440.2660S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionDC887596 EIC Citrus sinensis cDNA clone EIC0608 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887596 ID=DC887596; Name=DC887596; organism=Citrus sinensis; type=EST; length=634bp
CTGGATTTCAGCAAACAACCAGGTCTCATCAGCATTTGAAAGCTCATAGA
AACAACACTGTTCTCAACCTATCAAACAAGCCAGGTTCTTTAATTTTAGT
AATCTCTGAAAATAACCTATTGAGCTAAGAAACAAAAACTTCCTAGTATC
GCATTCACTCATCGGCTTCATCGTCTTCAGCAGCATTGAGTGCTTTCAAC
CTTTCAACTAACCTGGCTTTCCTTTCCTCGTACGTCAGTTTCTTCAGGTT
GTACCTCTTGTGCTCTGCTGGAGGCTTCTTCTCAGATTTCTTCTGGTTAG
GGTCTGCACGGATGGCAGCATGTACCTTCTTGTACAACTCTTCAAGGTTA
TCAGCCTCAATACCTCTCTTGATGTATTCACAAAAGTGAGACTGGTACTT
CTCTGGCTCATCTTCCATCAAAGTCCTCATGTAGGCAGCGACATGACCAC
AATAGATGTATTTACGGTGAACTTCAGCGTCAAGTTGCTTACTATCCTTA
CTGAATCCAGCAAATCTCTTCTCACTGTGAGGGATATCAAGTCCACCATC
CAATGCACCCTTAAGAGCGCCAAAGACACGGTTACCAGTAGTTGTTTCAC
AAGACCAACATCAAGCANGGCACGGGAAAGGCCT
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