DC887596

Overview
NameDC887596
Unique NameDC887596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 60/148 (40.54%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  188 PFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKAL 631
            PF          TTTG+++F           ++PHSE RF GF ++SK+ +AE HR  I   HVA YM  L E++ ++Y+  F +++  G+ ADNL   Y+KVH+AIRAD +   + KK     KR+  K+LTY+ERK R+ ++ KAL
Sbjct:  140 PFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADAS--PAAKKAAKPSKRHTAKRLTYDERKQRVADK-KAL 284          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 53/139 (38.13%), Postives = 80/139 (57.55%), Query Frame = -1
Query:  212 FPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKAR 628
            F C        TTTG RVF           +IPHS KRF G+S ++K  +AE+HR +I+  HVA YMRTL E++ E ++  F +YI  GI+AD++E +YK  HA+IR  P+++   ++ P    R+   +     R++R
Sbjct:  142 FRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSR 280          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.151e-21
Identity = 61/162 (37.65%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  194 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLD----AEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKK-----------PPAEHKRYNLKKLTYEERKARLVERLK 634
            RPF C        TT GNRVF            IPHS KRF GF+K     D     EVHR  IY  HVA YMRTL E++PE+YQ+ F  YI+  I+ D++E++Y++    IRA+P+  K E +             A+ +     KL  E RK R++++++
Sbjct:  140 RPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEEDPERYQAQFSAYIRNKIDPDSIEKMYEEAFQKIRANPDPVKKEAREVKRVRQGAMIKTAKSQYVRNVKLDKETRKERVLKKIQ 301          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.459e-21
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = -1
Query:  209 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARL 634
            RPF          T+TG +VF            +PH E RFAG++ +SK+L+AE  R YI+  HVA+YM  L  ++ + Y+  F +YIK G+   ++E +Y   H AIRA+P       K   + K  NL K T +++KAR+
Sbjct:  140 RPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARV 281          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.835e-20
Identity = 58/151 (38.41%), Postives = 80/151 (52.98%), Query Frame = -1
Query:  191 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 634
            RPF           TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y K H  IR +P    ++ K   +H R   K LT +    R V+  KA
Sbjct:  140 RPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKRQFSAYLKLGLDSESLEDMYAKAHENIRKNP-VLPTKPKRKLKHVREGSKVLTSKGSYVRNVKISKA 289          
BLAST of DC887596 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.077e-19
Identity = 57/151 (37.75%), Postives = 79/151 (52.32%), Query Frame = -1
Query:  191 RPFPCXA*CWSCETTTGNRVFXXXXXXXXXXXDIPHSEKRFAGFSKDSKQ---LDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 634
            RPF           TTGNRVF            +PHSEKRF G+S D +     DA+ HR  I+  HVA YM  L E++PEKY+  F  Y+K G+++++LE++Y   H  IR +P    ++ K   +H R   K LT +    R V+  KA
Sbjct:  140 RPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKKQFSAYLKLGLDSESLEDMYASAHENIRKNP-VLPTKPKRKLKHVREGSKVLTSKGSYVRNVKITKA 289          
The following BLAST results are available for this feature:
BLAST of DC887596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_CAEEL1.897e-2440.5460S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_ANOGA5.165e-2238.1360S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_EIMTE1.151e-2137.6560S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_DICDI7.459e-2136.6260S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_THEPA4.835e-2038.4160S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN1.077e-1937.7560S ribosomal protein L5 OS=Theileria annulata GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887596 EIC Citrus sinensis cDNA clone EIC0608 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887596 ID=DC887596; Name=DC887596; organism=Citrus sinensis; type=EST; length=634bp
CTGGATTTCAGCAAACAACCAGGTCTCATCAGCATTTGAAAGCTCATAGA
AACAACACTGTTCTCAACCTATCAAACAAGCCAGGTTCTTTAATTTTAGT
AATCTCTGAAAATAACCTATTGAGCTAAGAAACAAAAACTTCCTAGTATC
GCATTCACTCATCGGCTTCATCGTCTTCAGCAGCATTGAGTGCTTTCAAC
CTTTCAACTAACCTGGCTTTCCTTTCCTCGTACGTCAGTTTCTTCAGGTT
GTACCTCTTGTGCTCTGCTGGAGGCTTCTTCTCAGATTTCTTCTGGTTAG
GGTCTGCACGGATGGCAGCATGTACCTTCTTGTACAACTCTTCAAGGTTA
TCAGCCTCAATACCTCTCTTGATGTATTCACAAAAGTGAGACTGGTACTT
CTCTGGCTCATCTTCCATCAAAGTCCTCATGTAGGCAGCGACATGACCAC
AATAGATGTATTTACGGTGAACTTCAGCGTCAAGTTGCTTACTATCCTTA
CTGAATCCAGCAAATCTCTTCTCACTGTGAGGGATATCAAGTCCACCATC
CAATGCACCCTTAAGAGCGCCAAAGACACGGTTACCAGTAGTTGTTTCAC
AAGACCAACATCAAGCANGGCACGGGAAAGGCCT
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