DC887594 | Citrus Genome Database

Overview


Name	DC887594
Unique Name	DC887594
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	395

Libraries


Library Name	Type
EIC	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of DC887594 vs. ExPASy Swiss-Prot

BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175


Match Name	E-value	Identity	Description
H33_XENLA	9.040e-25	78.95	Histone H3.3 OS=Xenopus laevis PE=1 SV=3	[more]
H33_VITVI	9.040e-25	78.95	Histone H3.3 OS=Vitis vinifera PE=2 SV=3	[more]
H33_TRIPS	9.040e-25	78.95	Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3...	[more]
H33_TOBAC	9.040e-25	78.95	Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1	[more]
H33_SPISO	9.040e-25	78.95	Histone H3.3 OS=Spisula solidissima PE=1 SV=2	[more]
H33_RAT	9.040e-25	78.95	Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV...	[more]
H33_RABIT	9.040e-25	78.95	Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=...	[more]
H33_PINPS	9.040e-25	78.95	Histone H3.3 OS=Pinus pinaster PE=2 SV=3	[more]
H33_PIG	9.040e-25	78.95	Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3	[more]
H33_ORYSJ	9.040e-25	78.95	Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC