DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_KLUMA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces marxianus GN=CSE4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.955e-11
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDFKTD---LRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLI ++PF RLV+E+   F +D   LR+                VGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  114 LLISRMPFARLVKEVTDQFASDEEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 190          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_KLULA (Histone H3-like centromeric protein CSE4 OS=Kluyveromyces lactis GN=CSE4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.955e-11
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDFKTD---LRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLI ++PF RLV+E+   F T+   LR+                VGL E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct:  106 LLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRIRGQ 182          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: CENPA_ASHGO (Histone H3-like centromeric protein CSE4 OS=Ashbya gossypii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = -2
Query:  173 LLIRKLPFQRLVREIAQDFKT---DLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 394
            LLI ++PF RLV+E+   F T    +R+                VGL E TNL A+HAKRVT+M KD+QLARRIRG+
Sbjct:  126 LLISRMPFARLVKEVTDQFTTVDQQMRWQSMAILALQEASEAYIVGLLEHTNLLALHAKRVTVMRKDMQLARRIRGQ 202          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 40/75 (53.33%), Postives = 44/75 (58.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LLI+  PFQRLVR + +  K  LRF                V L  DTNL  IHAKRVTI PKDIQLA R+RGER
Sbjct:   55 LLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQLALRLRGER 128          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H31_ENCCU (Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = -2
Query:  152 LIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*ELSD 391
            LIR+LPFQR  R + ++    TD+RF                VGLFED  LCA HAKRVT+ PKDI L  ++R      +SD
Sbjct:   63 LIRRLPFQRACRSVVKECSNATDIRFQGPALASIQEALEVYLVGLFEDAMLCAYHAKRVTVFPKDISLVLKLRSRHVKSISD 144          
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CENPA_KLUMA1.955e-1149.35Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_KLULA1.955e-1149.35Histone H3-like centromeric protein CSE4 OS=Kluyve... [more]
CENPA_ASHGO5.688e-1148.05Histone H3-like centromeric protein CSE4 OS=Ashbya... [more]
H3_LEIIN7.429e-1153.33Histone H3 OS=Leishmania infantum PE=2 SV=1[more]
H31_ENCCU7.429e-1143.90Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 P... [more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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