DC887594 | Citrus Genome Database

Overview


Name	DC887594
Unique Name	DC887594
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	395

Libraries


Library Name	Type
EIC	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    5 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 80

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_DROME (Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.040e-25
Identity = 60/76 (78.95%), Postives = 60/76 (78.95%), Query Frame = -2

Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of DC887594 vs. ExPASy Swiss-Prot

BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175


Match Name	E-value	Identity	Description
H33_ORYSI	9.040e-25	78.95	Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_...	[more]
H33_ORYCO	9.040e-25	78.95	Histone H3.3 OS=Oryza coarctata PE=2 SV=3	[more]
H33_MOUSE	9.040e-25	78.95	Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2	[more]
H33_MEDSA	9.040e-25	78.95	Histone H3.3 OS=Medicago sativa PE=1 SV=2	[more]
H33_LOLTE	9.040e-25	78.95	Histone H3.3 OS=Lolium temulentum PE=2 SV=2	[more]
H33_LOLMU	9.040e-25	78.95	Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=...	[more]
H33_HUMAN	9.040e-25	78.95	Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2	[more]
H33_HORVU	9.040e-25	78.95	Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV...	[more]
H33_GOSHI	9.040e-25	78.95	Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV...	[more]
H33_DROME	9.040e-25	78.95	Histone H3.3 OS=Drosophila melanogaster GN=His3.3A...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC