DC887594
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 7.653e-24 Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LL+RKLPFQRLVREIAQDFKTDLRF VGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+ Sbjct: 61 LLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3) HSP 1 Score: 108.997 bits (271), Expect = 7.653e-24 Identity = 58/76 (76.32%), Postives = 59/76 (77.63%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LLIRKLPFQRLVREIAQD+K DLRF VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 61 LLIRKLPFQRLVREIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24 Identity = 57/75 (76.00%), Postives = 59/75 (78.67%), Query Frame = -2 Query: 170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394 LL+RKLPFQRLVREIAQDFK+DLRF VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER Sbjct: 61 LLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 1.305e-23 Identity = 59/76 (77.63%), Postives = 59/76 (77.63%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LLIRKLPFQRLVREIAQDFKTDLRF VGLFEDTNLCAI AKRVTIMPKDIQLARRIRGERA Sbjct: 60 LLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23 Identity = 58/76 (76.32%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LLIRKLPFQRLVREIAQDF TDLRF VGL EDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23 Identity = 58/76 (76.32%), Postives = 59/76 (77.63%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LLIRKLPFQRLVREIAQDFKT+LRF V LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA Sbjct: 61 LLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23 Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LLIRKLPFQRLVREIAQ+FKTDLRF VGLFEDTNLCAIHAKRVTIMPKDI LARRIRGER+ Sbjct: 64 LLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRGERS 139
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3) HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23 Identity = 58/76 (76.32%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LLIRKLPFQRLVREIAQDFK DLRF VGLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA Sbjct: 62 LLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRGERA 137
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3) HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23 Identity = 57/76 (75.00%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LL RKLPFQRLVREIAQDFKTDLRF VGLFEDTNLCAIHAKRVTIMPKD+QLARRIR ERA Sbjct: 61 LLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23 Identity = 57/76 (75.00%), Postives = 58/76 (76.32%), Query Frame = -2 Query: 167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394 LLI KLPFQRLVREIAQDFKTDLRF VGLFEDTNLCAIHAKRV+IMPKDIQL RRIRGERA Sbjct: 61 LLICKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIRGERA 136 The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bpback to top |