DC887594

Overview
NameDC887594
Unique NameDC887594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length395
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.653e-24
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LL+RKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   61 LLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.653e-24
Identity = 58/76 (76.32%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQD+K DLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 57/75 (76.00%), Postives = 59/75 (78.67%), Query Frame = -2
Query:  170 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 394
            LL+RKLPFQRLVREIAQDFK+DLRF                VGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Sbjct:   61 LLVRKLPFQRLVREIAQDFKSDLRFQSSAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.305e-23
Identity = 59/76 (77.63%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:   60 LLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L_HUMAN (Histone H3-like OS=Homo sapiens PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.705e-23
Identity = 58/76 (76.32%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDF TDLRF                VGL EDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   60 LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 58/76 (76.32%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFKT+LRF                V LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   61 LLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVRLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H33A_DICDI (Histone H3.3 type a OS=Dictyostelium discoideum GN=H3a PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.227e-23
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQ+FKTDLRF                VGLFEDTNLCAIHAKRVTIMPKDI LARRIRGER+
Sbjct:   64 LLIRKLPFQRLVREIAQEFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHLARRIRGERS 139          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L2_ARATH (Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 PE=2 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 58/76 (76.32%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLIRKLPFQRLVREIAQDFK DLRF                VGLFEDTNLCAIHAKRVTIM KDIQLARRIRGERA
Sbjct:   62 LLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMSKDIQLARRIRGERA 137          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 57/76 (75.00%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LL RKLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:   61 LLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136          
BLAST of DC887594 vs. ExPASy Swiss-Prot
Match: H3L_CAIMO (Histone H3-like OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.478e-23
Identity = 57/76 (75.00%), Postives = 58/76 (76.32%), Query Frame = -2
Query:  167 LLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 394
            LLI KLPFQRLVREIAQDFKTDLRF                VGLFEDTNLCAIHAKRV+IMPKDIQL RRIRGERA
Sbjct:   61 LLICKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVSIMPKDIQLTRRIRGERA 136          
The following BLAST results are available for this feature:
BLAST of DC887594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
H33L2_CAEEL7.653e-2475.00Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]
H33A_LILLO7.653e-2476.32Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3_GRIJA9.995e-2476.00Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]
H33_CHLRE1.305e-2377.63Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H3L_HUMAN1.705e-2376.32Histone H3-like OS=Homo sapiens PE=1 SV=3[more]
H3_STRPU2.227e-2376.32Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H33A_DICDI2.227e-2375.00Histone H3.3 type a OS=Dictyostelium discoideum GN... [more]
H3L2_ARATH2.908e-2376.32Histone H3-like 2 OS=Arabidopsis thaliana GN=MGH3 ... [more]
H3L1_ARATH3.798e-2375.00Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H3L_CAIMO6.478e-2375.00Histone H3-like OS=Cairina moschata PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionDC887594 EIC Citrus sinensis cDNA clone EIC0606 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887594 ID=DC887594; Name=DC887594; organism=Citrus sinensis; type=EST; length=395bp
TAGATTAAAAACCCTCGAAAACATTTTAACAAACACCTTAGATACATACT
AGACCCGATCTAATCCATCGGATAGACATCCAAACATTCATCTAAACCCC
AAATATTGACCGAAAGACTAACATCGCAGTAAGAGGAACAAAATAAATTA
AATCAGAAAGTTCCTAAGCCCTTTCACCCCTGATCCGCCTAGCAAGCTGA
ATGTCCTTGGGCATAATAGTGACCCTCTTAGCATGAATAGCGCAGAGGTT
GGTGTCCTCGAACAGCCCAACAAGATAAGCCTCAGCAGCCTCCTGAAGTG
CAGCAACAGCGCTGCTCTGGAACCTCAGATCCGTCTTGAAATCCTGAGCG
ATTTCCCTCACCAATCTCTGGAACGGAAGCTTCCTAATAAGAAGC
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