DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BACWK (Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST    + ++G  +++G   +I  +PTSK+T   A  L IPL  L+   ++DL IDGADE++  + L+KG GG+LLREK+V  + K+ ++I DESKLV HLG     +P+E++ + WK T KR+Q L    GC   LR    +PF+TDNGN +ID      I +       +  + GVVE G+F++M +  I+ ++ G+
Sbjct:   28 STVYWTIQKLGHRVQEG--LSIQAVPTSKETEVLAKQLSIPLISLNEIDILDLTIDGADEINNDLQLIKGGGGALLREKIVATSSKELIIIADESKLVSHLG--TFPLPIEIISFSWKQTEKRIQSL----GCETHLRMKDSRPFITDNGNLIIDCIFPNKILNPNDTHTELKMITGVVETGLFINMKSKAIIGTKNGI 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BACC1 (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.651e-35
Identity = 77/199 (38.69%), Postives = 123/199 (61.81%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST    ++++GE +++G   +   +PTSK+T   A  L IPL  L+    +DL IDGADE+D  ++L+KG GG+LLREK+V  + K+ ++I DESKLV HLG     +PVE++P+ WK T  ++Q L    GC   LR   ++ F+TDN N +ID     +I +     +++  + GVVE G+F++M +  I+ ++ G+
Sbjct:   27 STVYWTIEKLGERVKEG--LSFQAVPTSKETEVLAQQLNIPLISLNDIQSLDLTIDGADEIDSNLHLIKGGGGALLREKIVASSSKELLIIADESKLVTHLG--TFPLPVEIIPFSWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIIDCVFPHNITNPANLHNHLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.816e-35
Identity = 87/201 (43.28%), Postives = 127/201 (63.18%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA  AV  + + +++  L   +G+PTS++T EQA SLGIPL+ L+  P +DLAIDGADE++   +NL+KG GG+LLREK+V  +  + ++I D SK V HL G+   +PVEVV + WK T  R++ L    GC A LR T +  P++TD  +Y++D          K+A + +    GVVEHG+F+ MAT  I+A   G+
Sbjct:   31 STAAFAVGALAQRMQKEGL-QFIGVPTSERTAEQARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIIIADASKKVAHL-GTRFPVPVEVVRFGWKTTLARVEAL----GCQAVLRRTAEGDPYLTDEQHYILDCQFGPIANPAKLA-EQLKGTVGVVEHGLFIGMATEAIIAGPEGI 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPT (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.816e-35
Identity = 89/202 (44.06%), Postives = 125/202 (61.88%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC--VAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +R G    I+G+PTS+ T   A   GI L+ LD    +D+ IDGADEVD  ++L+KG GG+LLREK+V  A  + +VI DESKLV  LG     +P+EV+P+    T + LQ+ F   GC    KLR   D   FVTD G++++D  L + I D    +  +  + GVVEHG+F+ MA+TV++A   G+
Sbjct:   30 STAKHFVELLGERVRLG--LEIIGVPTSEVTRADAERCGIRLTSLDEIDRLDITIDGADEVDHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTVVLAGADGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPA (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris GN=rpiA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.816e-35
Identity = 89/202 (44.06%), Postives = 125/202 (61.88%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC--VAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +R G    I+G+PTS+ T   A   GI L+ LD    +D+ IDGADEVD  ++L+KG GG+LLREK+V  A  + +VI DESKLV  LG     +P+EV+P+    T + LQ+ F   GC    KLR   D   FVTD G++++D  L + I D    +  +  + GVVEHG+F+ MA+TV++A   G+
Sbjct:   30 STAKHFVELLGERVRLG--LEIIGVPTSEVTRADAERCGIRLTSLDEIDRLDITIDGADEVDHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTVVLAGADGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA1_OCEIH (Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus iheyensis GN=rpiA1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.816e-35
Identity = 85/196 (43.37%), Postives = 121/196 (61.73%), Query Frame = -2
Query:   13 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASE 600
            ST    +  +GE ++Q  L  I GIP+S +T   A   GIPL+D  +   +D+ IDGADEVD   +L+KG G +L REK++  A K+FV+IVD+SK+V  LG    ++PVEV+P+ W+ TA  +  L    GCV  +R   ++P VTDNGNY++D   K  I      +  I  + GV+E G+F+DMATTVIV  +
Sbjct:   31 STVYWMIRSLGERIQQDGL-KIEGIPSSNQTATWAEEAGIPLTDFSNVKELDITIDGADEVDANNHLIKGGGAALFREKIIAQAAKEFVIIVDQSKVVETLG--EFSLPVEVLPFSWQRTANEISKL----GCVPTVRVHEEEPLVTDNGNYILDCPFKV-IPHPDKLNKEIKSIVGVIETGLFIDMATTVIVGEK 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PYRKO (Ribose-5-phosphate isomerase A OS=Pyrococcus kodakaraensis GN=rpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.678e-35
Identity = 83/203 (40.89%), Postives = 126/203 (62.07%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST  + ++ +G+LL +G+L ++ G+PTS +    A+  GIP+  LD    +D+A+DGADEVDP MNL+KGRG +L  EK++      F+V+VDESKLV +L G  + +P+EV+P  W+  A+ L    E     A+LR     D P VTDNGN+++D    +  D  DL++  + I    GVVE+G+F D+A  ++V +  GV
Sbjct:   30 STTAYFINYLGKLLMEGELEDVYGVPTSHQARLLALEAGIPVVSLDEVDAIDIAVDGADEVDPHMNLIKGRGAALTMEKIIEYRAGMFIVLVDESKLVEYL-GQKMPVPIEVIPAAWRAIAEEL----EVFNATAELRMAVKKDGPVVTDNGNFILDAKFARIEDPLDLEIELNTI---PGVVENGIFADIADIILVGTPEGV 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_DEIRA (Ribose-5-phosphate isomerase A OS=Deinococcus radiodurans GN=rpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.678e-35
Identity = 84/199 (42.21%), Postives = 122/199 (61.31%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAK+A++ +G  L  G+L+ IVG+ TS+ + + A  +GIP   LD  P+ D+AIDGADE+ P ++LVKG GG+L+REKM     K+ ++I D +KLV  LG     +P+E+VP+ +  T +RL++         +LR  G QP+VTDNGNY+ D  L  +  D +     I    GVV+ G+FL MA    VA+  GV
Sbjct:   30 STAKYAIEELGRKLAAGELSGIVGVSTSEASEKLAREVGIPTEPLDPRPL-DIAIDGADEIAPNLDLVKGLGGALVREKMTEVQAKRLIIIADHTKLVTRLGEKA-PLPIEIVPFGFLSTIERLREFLPG----GRLRQPGAQPYVTDNGNYIFDAQLPAEF-DARELERRIKGTLGVVDTGLFLGMAERAFVAAPDGV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_THET8 (Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.803e-35
Identity = 90/199 (45.23%), Postives = 122/199 (61.31%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA++AV  +   LR+G+L  +VG+PTS+ T E A   GIPL DL    V DLAIDGADE+ P + L+KG GG+LLREK+V    K+F+VI D +K VP LG     +PVE+VP+ ++ T K + DL    G   +LR  GD+ + TD G+ + D      IGD       +L + GVVE G+F+ MAT  +VA   GV
Sbjct:   32 STARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPPEGV-DLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRG--PVPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGV 222          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_ENTFA (Ribose-5-phosphate isomerase A OS=Enterococcus faecalis GN=rpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.803e-35
Identity = 91/199 (45.73%), Postives = 125/199 (62.81%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR-TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STAK  VD IG  +++  L+ IVG+ TSK+T +QA++LGIPL  +D  P VDL IDGADE+      +KG G +LL EK+V    KK + IVD+SK+V  LG     +PVEVVPY     +++L  LFE+ G    LR     +  +TD G+++IDL+L+K I D +     +  L GVVEHG+FL+M + VIV  E G
Sbjct:   27 STAKFMVDEIGRRVKEEGLS-IVGVTTSKETEKQALALGIPLKSIDEVPYVDLTIDGADEISADFQGIKGGGAALLFEKIVATYSKKCIWIVDKSKMVDDLG--AFPLPVEVVPY----GSRQLVHLFEEKGYHPTLRLNAAGETLITDGGHHIIDLHLEK-ITDPEALGSYLDNLVGVVEHGLFLNMVSMVIVGYEDG 217          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_BACWK1.651e-3539.20Ribose-5-phosphate isomerase A OS=Bacillus weihens... [more]
RPIA_BACC11.651e-3538.69Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_SYNJA2.816e-3543.28Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_RHOPT2.816e-3544.06Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_RHOPA2.816e-3544.06Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA1_OCEIH2.816e-3543.37Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus... [more]
RPIA_PYRKO3.678e-3540.89Ribose-5-phosphate isomerase A OS=Pyrococcus kodak... [more]
RPIA_DEIRA3.678e-3542.21Ribose-5-phosphate isomerase A OS=Deinococcus radi... [more]
RPIA_THET84.803e-3545.23Ribose-5-phosphate isomerase A OS=Thermus thermoph... [more]
RPIA_ENTFA4.803e-3545.73Ribose-5-phosphate isomerase A OS=Enterococcus fae... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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