DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROM3 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain MIT 9303) GN=rpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.177e-31
Identity = 80/195 (41.03%), Postives = 113/195 (57.95%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +G  L  G+L  IVG+ TS +    A  LGIPL +L +   +DLAIDGADEVDP   L+KG G   ++EK+V     +FVV+VD +K+V  L   G  +PVEV+P  W+    RL +L    G +A LR    +  P VTD GN V+D+ +   IGD +     I  L GV+E+G+F+++   V+V
Sbjct:   32 STAALMIQALGAKLASGELREIVGVTTSFQGEVMAAELGIPLRNLTAVDRIDLAIDGADEVDPSFQLIKGGGACHVQEKLVASRADRFVVVVDSTKIVDRL-NLGFLLPVEVLPGAWRQVQGRLAEL----GGIADLRMAQCKAGPVVTDQGNLVLDVSMAGGIGDPEDLECRINNLPGVLENGLFVNLTDEVLV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SYNPW (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain WH7803) GN=rpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.374e-31
Identity = 77/193 (39.90%), Postives = 113/193 (58.55%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +GE L  G+L++IVG+ TS +    A  LGIPL  L++   +DLAIDGADEVDP   L+KG G   ++EK+V     +F+V+VD +KLV  L   G  +PVEV+P  W   +++L+ +  D       R  G  P VTD GN V+D+  +  I D       I  + GV+E+G+F+++A  V+V
Sbjct:   32 STAALMIKGLGERLAAGQLSDIVGVTTSFQGEVLAAELGIPLRSLNAVDRIDLAIDGADEVDPAFQLIKGGGACHVQEKLVAARADRFIVVVDSTKLVERL-NLGFLLPVEVLPGAWVQISQQLKAMGGDAELRMATRKAG--PVVTDQGNLVLDVRFEGGIADPASLEKEINNIPGVLENGLFVNLADEVLV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SYNP2 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.374e-31
Identity = 83/193 (43.01%), Postives = 111/193 (57.51%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            ST  +A+  IGE L  G+L NIVGIPTS +    A    IPLS LD+   +D+AIDGADEVDP  NL+KG G +  REK+V     KFVV+VD  KLV  LG + L +PVEV+P       ++L+ L         ++  G  P VTD GN V+DL     I D       I  + GV+E+G+F+ +A  ++V
Sbjct:   31 STTAYAIQYIGERLAAGELENIVGIPTSFQAEVLAKQYKIPLSSLDAVDHIDVAIDGADEVDPQKNLIKGGGAAHTREKVVDALANKFVVVVDSGKLVDRLGSTFL-LPVEVIPMAITPVMRQLEALGGKPELRMGVKKAG--PVVTDEGNLVVDLKF-AGIDDPATLEQKINNIPGVLENGLFVGVADVILV 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BRUSU (Ribose-5-phosphate isomerase A OS=Brucella suis GN=rpiA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.374e-31
Identity = 77/201 (38.31%), Postives = 117/201 (58.21%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVA--KLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA+  V  + E ++ G    ++G+PTS++T +    LG+ L+ L+  P +DL IDGADEVD  ++L+KG GG+LLREK+V  A    +VI D+SK+V  LG     +P+EV  +    T + ++     CG      LR     PF+TD G+Y++D    + I D K  SD +  + GVVEHG+F+ +A   I+A   G+
Sbjct:   31 STAEEFVRLLAEKVKGG--FRVIGVPTSERTAKLCEELGVALTTLEETPHLDLTIDGADEVDGELSLIKGGGGALLREKIVAAASDSMIVIADQSKVVETLG--RFPLPIEVNRFGLGATIRAIEAAAVKCGLAGPLNLRLKDGSPFLTDGGHYIVDASFGR-IPDPKTLSDALFAIPGVVEHGLFIGLARAAIIAGTDGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PYRFU (Ribose-5-phosphate isomerase A OS=Pyrococcus furiosus GN=rpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.599e-30
Identity = 74/201 (36.82%), Postives = 119/201 (59.20%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST  + +  +GE++ +GK+ +I G+P   K     +  G+P+  LD    +D+A+DGADEVDP +NL+KGRG +L  EK++      F+V+VDESKLV +L    + +P+EV+P  WK   + L     +     ++    D P VT+NGN++ID    +  D  D+++  + I    GVVE+G+F D+A  V+V ++ GV
Sbjct:   30 STTAYFIRYLGEMIEKGKVEDIYGVPPPIKQKFLRMESGVPVLSLDQVDAIDIAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDESKLVDYL-CQKMPVPIEVIPAAWKAILEELS--IFNAKAELRMGVKKDGPVVTENGNFIIDAKFPRIDDPLDMEIELNTI---PGVVENGIFADIADIVLVGTKEGV 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_JANSC (Ribose-5-phosphate isomerase A OS=Jannaschia sp. (strain CCS1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.599e-30
Identity = 78/201 (38.81%), Postives = 120/201 (59.70%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED---CGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA   V  +GEL+R   +  I G+ TS +T + A  +G+ +  LD    +DL IDG DE DP +NL+KG GG+LL EK+V  A  + VVI D +K V  LG     +PVEV+P+ W+ T   ++++  +    G  A LR +G +PF TD GN ++DL+L++ I      S  + ++ GVVE+G+FLD+   +++ +  G
Sbjct:   35 STAAWMVRCLGELVRDEGM-QITGVATSTRTADLARDVGVTVKTLDDVRWLDLTIDGTDEYDPNLNLIKGGGGALLHEKVVATASDQMVVIADPTKQVDTLG--AFPLPVEVIPFGWQTTKALIEEMLSNLDVLGRSASLRLSGAEPFRTDEGNLILDLHLRR-IAQPAQLSLVLNQIPGVVENGLFLDICDVLVIGNADG 231          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHIME (Ribose-5-phosphate isomerase A OS=Rhizobium meliloti GN=rpiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.088e-30
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL--RTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    I G+PTS++T    + LG+PL  LD  P +DL IDGADEVD  + L+KG GG+LLREK+V  A  + +VI DESK+V  LG     +P+E+ P+    T   ++      G   ++  R++GD  F+TD G+ ++D    + I D    +  +  + GVVEHG+F+D+A+  I+A   G
Sbjct:   30 STAEEFVRLLAEKVASG--FQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLG--AFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRMU (Ribose-5-phosphate isomerase A OS=Streptococcus mutans GN=rpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 87/202 (43.07%), Postives = 118/202 (58.42%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDL--KVASDNIL-RLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ +G  +++  L  ++G+ TS +T  QA +LGIPL  +D    VD+ +DGADEVDP  N +KG GG+LL EK+V    K ++ +VDESK+V  LG     +PVEVV Y     A+RL   FE  G     R      FVTD  N++IDL    D+G +   +A  N+L    GVVEHG+F  M   VIVA + GV
Sbjct:   28 STAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLG--AFRLPVEVVQY----GAERLFREFEKKGYKPSFREYDGVRFVTDMKNFIIDL----DLGSIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SPHAL (Ribose-5-phosphate isomerase A OS=Sphingopyxis alaskensis GN=rpiA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.562e-30
Identity = 77/194 (39.69%), Postives = 109/194 (56.19%), Query Frame = -2
Query:   19 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA 600
            STA +AV  + E ++ G    I  + TS+ T   A+ L +PL        VDL IDGADE+D     +KG GG+LLREK+   A  + ++I D SKLV  LG     +PVEVVP+  +F   RL  L    G    +R  G  PF+TD GNY++D  L +     ++A+  I  + GV+EHG+FLD   T+++A
Sbjct:   31 STAAYAVKSLSERIKHG--LRITAVATSQATEALALRLAVPLVPFQQLSAVDLTIDGADEIDDRFQAIKGGGGALLREKITESASTRVIIIADSSKLVAQLG--KFPLPVEVVPFATEFVRARLSAL----GARVTVREAGGTPFLTDQGNYILDAALDEIPRPREIAA-AITTIPGVLEHGLFLDEIDTIMIA 215          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_TREDE (Ribose-5-phosphate isomerase A OS=Treponema denticola GN=rpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.652e-30
Identity = 81/203 (39.90%), Postives = 117/203 (57.64%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPV---VDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA  AV R+ +LL  GKL  I  +PTS +T  +   LGIP+  L S  +   +DLAIDGADE+DP  NL+KG G +LL+EK++    K+FVVI DE K V  + G G A+P+E++P       K L+    +      ++  G  P VTDNGN++ID+   K  D+ D K   +++ ++ GVVE+G F      V +  + G
Sbjct:   36 STAMPAVHRLAQLLSSGKLKKIYAVPTSFQTSIECEKLGIPIYSLSSQQIGGSLDLAIDGADEIDPDKNLIKGGGAALLKEKIIAYNSKEFVVIADERKKVKSM-GKGFALPIEIIPEARLSITKALEAQGIEVFLREGVKKMG--PVVTDNGNFIIDVKWPKAADV-DPKALEESLNKITGVVENGFFTKNTPRVFIVHQDG 234          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_PROM37.177e-3141.03Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_SYNPW9.374e-3139.90Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_SYNP29.374e-3143.01Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_BRUSU9.374e-3138.31Ribose-5-phosphate isomerase A OS=Brucella suis GN... [more]
RPIA_PYRFU1.599e-3036.82Ribose-5-phosphate isomerase A OS=Pyrococcus furio... [more]
RPIA_JANSC1.599e-3038.81Ribose-5-phosphate isomerase A OS=Jannaschia sp. (... [more]
RPIA_RHIME2.088e-3038.50Ribose-5-phosphate isomerase A OS=Rhizobium melilo... [more]
RPIA_STRMU2.727e-3043.07Ribose-5-phosphate isomerase A OS=Streptococcus mu... [more]
RPIA_SPHAL3.562e-3039.69Ribose-5-phosphate isomerase A OS=Sphingopyxis ala... [more]
RPIA_TREDE4.652e-3039.90Ribose-5-phosphate isomerase A OS=Treponema dentic... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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