DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRS2 (Ribose-5-phosphate isomerase A OS=Streptococcus suis (strain 98HAH33) GN=rpiA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 84/198 (42.42%), Postives = 112/198 (56.57%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA + V  IG  + +  L  I G+ TS  T E A SLGIPL ++D    VDL +DGADEVD   N +KG G +LL EK+V    K  + IVDESK+V  LG     +PVEVV Y     A+ L  LFE  G     R    +  +TD  N++IDL L++ I D    ++ + R  GVVEHG+F+ + + VIV +  G
Sbjct:   28 STAYYFVQEIGRRVAEEGL-QITGVTTSHATAEHAASLGIPLKNIDEVEYVDLTVDGADEVDGDFNGIKGGGAALLMEKVVAVNSKDCIWIVDESKMVQTLG--AFKLPVEVVQY----GAENLFRLFEKKGYRPSFRMRNGKKHITDMQNFIIDLDLRR-IEDTYALAEELDRTVGVVEHGLFIGLISKVIVGTPEG 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPJ (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 84/200 (42.00%), Postives = 114/200 (57.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I+ + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QIIAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRRFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_AGRVS (Ribose-5-phosphate isomerase A OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpiA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.015e-29
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC--VAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    + G+PTS++T    + LG+PL  LD  P +DL +DGADE+D  + L+KG GG+LLREK+V  A  + +VI DE+KLV  LG     +P+E+  +    T   ++      G      LR +GD  F+TD G+Y++D    + I D    S  +  + GVVEHG+F+ MA+  +VA   G
Sbjct:   30 STAEEFVRLLAEKVADG--FKVQGVPTSERTARLCLELGVPLMSLDELPELDLTVDGADELDRHLTLIKGGGGALLREKIVAAASSRVIVIADETKLVETLG--AYPLPIEINGFGGIATRISIEKAAAKLGLSGTIGLRMSGDDLFMTDGGHYILDASFGR-IPDAVALSQALHAIPGVVEHGLFIGMASLAVVAGSDG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_DINSH (Ribose-5-phosphate isomerase A OS=Dinoroseobacter shibae (strain DFL 12) GN=rpiA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.938e-29
Identity = 78/201 (38.81%), Postives = 119/201 (59.20%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDC---GCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA   V  + E + Q  + +I  + TS +T E A  L + ++ LD    +DL IDGADE DP +NL+KG GG+LL+EK+V  A  + +VI D SK V  LG     +PVEV+ + W+ T   +++   +    G  A LR     P+VTD GN+++DL+L++ IG+ +  S  + +L GVVE+G+FLD+   V++    G
Sbjct:   35 STAAWMVRHLAETVDQEGM-DITCVATSTRTAELARDLKLHVTTLDEVKWLDLTIDGADEFDPTLNLIKGGGGALLQEKIVATASDRMIVITDASKAVATLG--AFPLPVEVIRFGWETTRTLIEETLVNVDVGGREAILRMENGMPYVTDEGNFIVDLHLER-IGNPRQVSLVLNQLPGVVENGLFLDICDVVVIGKSDG 231          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROMT (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain NATL2A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.144e-29
Identity = 72/193 (37.31%), Postives = 110/193 (56.99%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   ++ +   ++ G++ ++VG+ TS +    A  LGIPL  L S   +DLAIDGADEV+P   L+KG G   ++EK+V    KKF+V+VD +KLV  L      +PVEV+P  WK   K L +L  +       +  G  P VTD GN ++DL  +  I   ++    I  + GV+E+G+F+++   V+V
Sbjct:   31 STAALMIEALAIKIKSGEIKDVVGVTTSFQGEVLASELGIPLKSLSSVSEIDLAIDGADEVNPKFQLIKGGGACHVQEKLVAALAKKFIVVVDSTKLVEKL-NLDFKLPVEVLPSAWKQVQKTLINLGGEGNLRMAQKKAG--PIVTDQGNLILDLTFRNGIDKPELLESQINNIPGVLENGLFVNLTDEVLV 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CYAP7 (Ribose-5-phosphate isomerase A OS=Cyanothece sp. (strain PCC 7424) GN=rpiA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.144e-29
Identity = 79/193 (40.93%), Postives = 110/193 (56.99%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            ST  +A+  IGE ++ G+L N+VG+PTS      A   G+PL+ LD    +DLAIDGADEVDP  NL+KG G +  REK+V      F+V+VD  KLV  LG + L +PVEV+P       K L+ L         ++  G  P VTD GN VID+    +I D       I  + GV+E+G+F+ +A  ++V
Sbjct:   35 STTAYAIQYIGERIQTGELKNVVGVPTSFGAEVLARKYGVPLTTLDVIDKMDLAIDGADEVDPQKNLIKGGGAAHTREKIVDSLADVFIVVVDSGKLVDKLGSTFL-LPVEVIPMAVTPVIKALEKLGGKTDLRMGVKKAG--PVVTDQGNLVIDVKF-DNIEDPANLEKTINNIPGVLENGLFVGVADLILV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BARHE (Ribose-5-phosphate isomerase A OS=Bartonella henselae GN=rpiA PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.144e-29
Identity = 74/196 (37.76%), Postives = 113/196 (57.65%), Query Frame = -2
Query:   19 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA 600
            ST    +  +GE +  G    +  + TS+ + +     G+P+S L+  P +DL IDGADE+ P M L+KG GG+LL EK+V  A +   VI DE+K+V  LG    A+P+EV P+    T   ++   ++ G   +  LR  GD PF TD G+++ D +  + I   K+ S+ +L + GVVEHG+FL +A+  IVA
Sbjct:   30 STVNEFIPLLGERVANG--LRVTCVATSQYSEQLCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG--AFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFIFDAFWGR-ILQPKLLSEALLAIPGVVEHGLFLGLASRAIVA 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SYNSC (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain CC9605) GN=rpiA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 78/195 (40.00%), Postives = 111/195 (56.92%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +G  L  G+L +IVG+ TS +    A  L IPL  L++   +DLAIDGADEVDP   L+KG G   ++EK+V     +FVV+VD +KLV  L   G  +PVEV+P  W+   ++L+ L    G  A+LR    +  P VTD GN V+D  L   I D       I  + GV+E+G+F+++   V+V
Sbjct:   32 STAALMIQGLGAKLASGELKDIVGVTTSFQGEVLAAELNIPLLSLNAVSRIDLAIDGADEVDPGFQLIKGGGACHVQEKLVAARADRFVVVVDSTKLVDRL-NLGFLLPVEVLPGAWRQVKQQLEAL----GGSAELRMAQRKAGPVVTDQGNLVLDAKLDGGISDPVALEQTINNIPGVLENGLFVNITDEVLV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPN (Ribose-5-phosphate isomerase A OS=Streptococcus pneumoniae GN=rpiA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVA-SDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I  + TS  T +QA  L IPL  +D    VD+ +DGADEVD   N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L  D+ +  +A    +  + GVVEHG+F  M   VIVA   GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QITAVTTSSVTSKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLAL--DVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROM4 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain MIT 9211) GN=rpiA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.718e-29
Identity = 74/195 (37.95%), Postives = 112/195 (57.44%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +G  +  G L +IVG+ TS +    A  LGIPL  L +   +DLAIDGADEVD    L+KG G   ++EK+V    ++FVV+VD SK+V  L  +   +PVEV+P  W+    ++ ++    G V++LR    +  P VTD GN V+D+     I D +     I  + GV+E+G+F+++A  V+V
Sbjct:   32 STAALMIKALGAKISSGHLKDIVGVTTSFQGEVLATELGIPLQGLSAVSQIDLAIDGADEVDSNFQLIKGGGACHVQEKLVASLAERFVVVVDSSKIVKTLNLT-FKLPVEVLPSAWQLVKNKIHEI----GGVSQLRMAQKKAGPIVTDQGNLVLDVTFAGGINDPQTLEKQINNIPGVLENGLFVNLADEVLV 221          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_STRS23.015e-2942.42Ribose-5-phosphate isomerase A OS=Streptococcus su... [more]
RPIA_STRPJ3.015e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_AGRVS3.015e-2938.00Ribose-5-phosphate isomerase A OS=Agrobacterium vi... [more]
RPIA_DINSH3.938e-2938.81Ribose-5-phosphate isomerase A OS=Dinoroseobacter ... [more]
RPIA_PROMT5.144e-2937.31Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_CYAP75.144e-2940.93Ribose-5-phosphate isomerase A OS=Cyanothece sp. (... [more]
RPIA_BARHE5.144e-2937.76Ribose-5-phosphate isomerase A OS=Bartonella hense... [more]
RPIA_SYNSC6.718e-2940.00Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_STRPN6.718e-2942.00Ribose-5-phosphate isomerase A OS=Streptococcus pn... [more]
RPIA_PROM46.718e-2937.95Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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