DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BACSK (Ribose-5-phosphate isomerase A OS=Bacillus clausii (strain KSM-K16) GN=rpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.803e-35
Identity = 87/202 (43.07%), Postives = 124/202 (61.39%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK---VASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST    V  +GE  ++G   NI  +  S+KT   A + GI + D  +   +++A DGADE+ P + L+KG GGSLLREK+V  A K+ VV+ DESKLV  LG     +PVE++P+ W+ TA R++ L    G VA LR TG  PFV+DN N+++D     D G+++      + + +L GVVE G+FLDMA   IVAS+ G+
Sbjct:   28 STVFEFVRVLGEKAKEG--LNIQAVAASRKTEALAKACGIHIIDFPTMEKLEVAFDGADEIAPGLMLLKGGGGSLLREKLVAAAAKRLVVLADESKLVEELG--AFKLPVEIIPFGWETTAMRIEAL----GGVASLRQTGKSPFVSDNHNWILDC----DFGNIRDPYSLHEKVKKLVGVVETGLFLDMACEAIVASKNGI 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOP5 (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisA53) GN=rpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.273e-35
Identity = 84/202 (41.58%), Postives = 126/202 (62.38%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC--VAKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +G  ++ G    +VG+PTS+ T   A   GIPL+ LD    +DL +DGADE+DP +NLVKG GG+LLREK+V  A  + +VI D+SKLV  LG     +P+EV+P+    T + ++     CG     KLR   D   FVTD G++++D +L + I D    +  +  + G+VEHG+F+ +A++V++AS  G+
Sbjct:   30 STAKHFVELLGAKVQGG--LQVVGVPTSEVTRADAERCGIPLATLDEVDHLDLTVDGADEIDPALNLVKGGGGALLREKIVAAASGRMIVIADDSKLVETLG--RFPLPIEVIPFGLAATRRAIEQALAVCGIDGELKLRNGKDGHAFVTDGGHWIVDAHLGR-IPDAPRLAGLLSVIPGIVEHGLFIGLASSVVLASPHGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRA1 (Ribose-5-phosphate isomerase A OS=Streptococcus agalactiae serotype Ia GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 89/199 (44.72%), Postives = 121/199 (60.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   V+ IG  +++  L  +VG+ TS +T EQA  L IPL   D   V+D+ +DGADEVDP  N +KG GG+LL EK+V    K+++ +VDESKLV  LG     +PVEVV    ++ ++RL  +F+  G     R T    F+TD GNY+IDL LKK I D K  ++ +    GVVEHG+F  M   VIVA + G+
Sbjct:   28 STAYFFVEEIGRRVKEEGL-QVVGVTTSNRTTEQARGLAIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLG--AFKLPVEVV----RYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKK-IEDPKQLANELDHTVGVVEHGLFNGMVNKVIVAGKNGL 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHILW (Ribose-5-phosphate isomerase A OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    + G+PTS++T    V LG+PL  LD  P +DL IDGADEVDP + L+KG GG+LLREK+V  A ++ +VI DESKLV  LG    A+P+EV P+    T   ++ +    G   +  LR +GD  F TD G+++ID    + I D +  S  +  + GVVEHG+F++MA   I+A   G
Sbjct:   30 STAEEFVRLLAEKVASG--FKVEGVPTSERTARLCVELGVPLKSLDELPALDLTIDGADEVDPALRLIKGGGGALLREKIVAAASERMIVIADESKLVDTLG--AYALPIEVNPFGLVSTRIAIEKVAARLGLAGELSLRQSGDGEFTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.193e-35
Identity = 95/203 (46.80%), Postives = 124/203 (61.08%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTG-DQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRL---AGVVEHGMFLDMATTVIVASELGV 600
            STA  A+  I  L+++GKL +IVGIP+S  T E A SLGIPL   + + V+D+ IDGADEVDP +NL+KG GG+LLREK+V  A KK ++IVDESK+   L G+  A+PVEVVP+    TA   + L E  G    +R     + F TDN N ++D     D G +  A    + L   AGVVEHG+FL     VIVA   G+
Sbjct:   31 STATFAIHAIARLMKEGKLKDIVGIPSSTPTEEVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIVDESKISDKL-GTIFALPVEVVPFA---TASETRFL-ESLGAKVTVRENQLGKAFKTDNHNRILD----ADFGPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROMP (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.070e-34
Identity = 83/195 (42.56%), Postives = 117/195 (60.00%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  + E +R GKL NI G+PTS ++   A+ L IPL DL S P +DLAIDGADEVDP   L+KG G   +REK+V     K ++++DESKLV +L      +PVEV+P  W    K+++D+  +   V+ LR  T    P VTD GN ++D+     I D K     I  + GV+E+G+F+D+A  V+V
Sbjct:   25 STAALMIKSLAEKIRSGKLKNIKGVPTSFQSEVLALELNIPLIDLASVPYIDLAIDGADEVDPDFQLIKGGGACHVREKLVASKANKLLIVIDESKLVQNL-NQVFPLPVEVMPSAW----KQVKDIISEMSGVSNLRMATKKAGPVVTDQGNLILDVLFDAGIRDPKDLEMRINNIPGVLENGLFVDLADKVLV 214          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PARL1 (Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.070e-34
Identity = 83/201 (41.29%), Postives = 126/201 (62.69%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGD---QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+H V  +GE ++ G   +IVG+PTS++T + A SLGIPL++LD  P +D+ +DGADE+D  + L+KG GG+LLREK+V  A  + +VI D SKLV  LG     +PVEV+P+    TA+++ ++    GC  K+    D   +PF TD+ N++ D      I D    S  + R+ GVV++G+F+ +A   IV ++ G
Sbjct:   30 STAEHFVRALGEKVKAG--LDIVGVPTSERTAKLAASLGIPLTNLDDTPHLDITVDGADELDGKLRLIKGGGGALLREKIVATASDRMIVIADASKLVKTLG--SFPLPVEVIPFGSAVTARKIAEVASAHGCTGKMSRRADEYGEPFFTDSENFIYDCAF-GSIPDPDGLSAALNRIPGVVDNGLFIGIAAMAIVGTDKG 225          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BACAN (Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.070e-34
Identity = 76/199 (38.19%), Postives = 119/199 (59.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   + ++G+ +++G   +I  +PTSK+T   A  L IPL  L+    +DL IDGADE+D  + L+KG GG+LLREK+V  + K+ ++IVDESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR   ++ F+TDN N +ID      I         +  + GVVE G+F++M +  I+ ++ G+
Sbjct:   27 STAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BACHK (Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.397e-34
Identity = 75/199 (37.69%), Postives = 119/199 (59.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   + ++G+ +++G   +I  +PTSK+T   A  L IPL  L+    +DL IDGADE+D  + L+KG GG+LLREK+V  + K+ ++IVDESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR   ++ F+TDN N ++D      I         +  + GVVE G+F++M +  I+ ++ G+
Sbjct:   27 STAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIVDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BACCZ (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.397e-34
Identity = 75/199 (37.69%), Postives = 119/199 (59.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   + ++G+ +++G   +I  +PTSK+T   A  L IPL  L+    +DL IDGADE+D  + L+KG GG+LLREK+V  + K+ ++I+DESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR   ++ F+TDN N +ID      I         +  + GVVE G+F++M +  I+ ++ G+
Sbjct:   27 STAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIIDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIIDCIFPNHIPTPSDLHKRLKMITGVVETGLFVNMTSKAIIGTKNGI 217          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_BACSK4.803e-3543.07Ribose-5-phosphate isomerase A OS=Bacillus clausii... [more]
RPIA_RHOP56.273e-3541.58Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_STRA18.193e-3544.72Ribose-5-phosphate isomerase A OS=Streptococcus ag... [more]
RPIA_RHILW8.193e-3542.00Ribose-5-phosphate isomerase A OS=Rhizobium legumi... [more]
RPIA_DESAA8.193e-3546.80Ribose-5-phosphate isomerase A OS=Desulfatibacillu... [more]
RPIA_PROMP1.070e-3442.56Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_PARL11.070e-3441.29Ribose-5-phosphate isomerase A OS=Parvibaculum lav... [more]
RPIA_BACAN1.070e-3438.19Ribose-5-phosphate isomerase A OS=Bacillus anthrac... [more]
RPIA_BACHK1.397e-3437.69Ribose-5-phosphate isomerase A OS=Bacillus thuring... [more]
RPIA_BACCZ1.397e-3437.69Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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