DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_THERP (Ribose-5-phosphate isomerase A OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.384e-34
Identity = 90/200 (45.00%), Postives = 126/200 (63.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDP-FMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA+ AV  +GE L  G    ++G+ TS++T   A  +GI L D DS   +DLAIDGADEV+   + L+KGRGG+L+REK+V    ++ V+I+D+SKLV  L G+   +PVEVVP+ W++ A+ L+DL        + R TG  PF +DNGN ++D+     I D       I  L GV++HG+FLDMA  VIV SE G+
Sbjct:   30 STAELAVRALGERLHDG--LRLIGVATSQRTAALARRVGIELRDPDSVDRIDLAIDGADEVEERSLGLLKGRGGALVREKLVARMARRLVIIIDDSKLVAAL-GARFPLPVEVVPFGWRWCARWLEDL--GGRPTLRCRPTG-HPFRSDNGNLILDVAFGA-IADPAWLDRTIKMLPGVIDHGLFLDMADLVIVGSETGI 222          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHIEC (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.384e-34
Identity = 83/200 (41.50%), Postives = 119/200 (59.50%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    + G+PTS++T    V LG+PL  LD  P +DL +DGADEVDP + L+KG GG+LLREK+V  A ++ +VI DESKLV  LG    A+P+EV P+    T   ++ +    G   +  LR +GD  F TD G+++ID    + I D +  S  +  + GVVEHG+F++MA   I+A   G
Sbjct:   30 STAEEFVRLLAEKVAGG--FQVEGVPTSERTARLCVELGVPLKSLDELPALDLTVDGADEVDPALRLIKGGGGALLREKIVAAASQRMIVIADESKLVETLG--AFALPIEVNPFGLVSTRIAIEKVAARLGLSGELNLRQSGDGEFTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHIE6 (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CIAT 652) GN=rpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.113e-34
Identity = 83/200 (41.50%), Postives = 119/200 (59.50%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    + G+PTS++T    V LG+PL  LD  P +DL +DGADEVDP + L+KG GG+LLREK+V  A ++ +VI DESKLV  LG    A+P+EV P+    T   ++ +    G   +  LR +GD  F TD G+++ID    + I D +  S  +  + GVVEHG+F++MA   I+A   G
Sbjct:   30 STAEEFVRLLAEKVAGG--FRVEGVPTSERTARLCVELGVPLKSLDELPALDLTVDGADEVDPALRLIKGGGGALLREKIVAAASERMIVIADESKLVDTLG--AYALPIEVNPFGLVSTRIAIEKVAARLGLSGELSLRQSGDGEFTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_GLUOX (Ribose-5-phosphate isomerase A OS=Gluconobacter oxydans GN=rpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 90/202 (44.55%), Postives = 127/202 (62.87%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDP-FMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC--VAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + ++R+GE + +G    I GIPTS  + ++A+  GIPL+D  ++  +D+AIDGADEV    +NL+KG GG+LLREK+V  A K+FVVIVD +K V  L G    +PVEV+ + W+ TA+RL      CG   V          FVTD GN ++D +    I   +  ++ I R+ GVVEHGMFL+MA+ V+VA+  GV
Sbjct:   33 STAAYMIERLGERVAEG--LEIFGIPTSDDSEDKALKAGIPLTDFSAHRRIDIAIDGADEVQRGSLNLIKGLGGALLREKIVAQAAKRFVVIVDGTKPVDLL-GERAPVPVEVISFGWECTAERL----AACGARGVKPRTDRAGSLFVTDTGNMILDCHF-GPIEKPEELAEKIDRIVGVVEHGMFLNMASEVLVATPDGV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BRAJA (Ribose-5-phosphate isomerase A OS=Bradyrhizobium japonicum GN=rpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 78/206 (37.86%), Postives = 125/206 (60.68%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT----GDQP---FVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +  G    ++G+PTS+ T   A   G+PL+ LD    +D+ +DGADE+DP +NL+KG GG+LLREK+V  A  + +VI D++K VP LG     +P+EV+P+    T + ++  F  CG   ++       GD+    FVTD G++++D  L + I D    +  +  + GVVEHG+F+ +A++ ++A   G+
Sbjct:   30 STAKHFVELLGERVAAG--LKVIGVPTSEATRLDATRCGVPLTTLDEIDHLDITVDGADEIDPELNLIKGGGGALLREKIVAAASDRMIVIADDTKWVPTLG--RFPLPIEVIPFGLGATRRAIETAFAQCGVSGQMAVRKAKGGDKDGHVFVTDGGHWILDAQLGR-IVDPPSLAKALSAIPGVVEHGLFIGLASSAVLAGGEGI 230          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PYRAB (Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi GN=rpiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.058e-34
Identity = 79/203 (38.92%), Postives = 127/203 (62.56%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST  + +  +G+++++G++++IVG+PTS ++   A+  GIP++ LD    +D+A+DGADEVDP +NL+KGRG +L  EK++      F+V+VDE KLV +L    + +P+EV+P  W+   + L          AKLR     D P +TDNGN++ID    +  D  D+++  + I    GVVE+G+F D+A  VIV ++ GV
Sbjct:   30 STTAYFIRLLGDMIKKGEVSDIVGVPTSYQSRLLAIESGIPVATLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIESRAGMFIVLVDERKLVDYL-CQKMPVPIEVIPQAWRAIVEELSIF----NAEAKLRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTI---PGVVENGIFADIADIVIVGTKEGV 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPZ (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPG (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPF (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPD (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_THERP2.384e-3445.00Ribose-5-phosphate isomerase A OS=Thermomicrobium ... [more]
RPIA_RHIEC2.384e-3441.50Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]
RPIA_RHIE63.113e-3441.50Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]
RPIA_GLUOX5.310e-3444.55Ribose-5-phosphate isomerase A OS=Gluconobacter ox... [more]
RPIA_BRAJA6.936e-3437.86Ribose-5-phosphate isomerase A OS=Bradyrhizobium j... [more]
RPIA_PYRAB9.058e-3438.92Ribose-5-phosphate isomerase A OS=Pyrococcus abyss... [more]
RPIA_STRPZ1.545e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPG1.545e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPF1.545e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPD1.545e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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