DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRP6 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M6 GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHIL3 (Ribose-5-phosphate isomerase A OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 83/200 (41.50%), Postives = 118/200 (59.00%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    + G+PTS++T    V LG+PL  LD  P +DL IDGADEVD  + L+KG GG+LLREK+V  A ++ +VI DESKLV  LG    A+P+EV P+    T   ++ +    G   +  LR +GD  F TD G+++ID    + I D +  S  +  + GVVEHG+F++MA   I+A   G
Sbjct:   30 STAEEFVRLLAEKVAGG--FRVEGVPTSERTARLCVELGVPLKSLDELPALDLTIDGADEVDQALRLIKGGGGALLREKIVAAASERMIVIADESKLVETLG--AFALPIEVNPFGLVSTRIAIEKVAARLGLSGELDLRQSGDGEFTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMAALAIIAGPAG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_NITWN (Ribose-5-phosphate isomerase A OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.545e-33
Identity = 79/202 (39.11%), Postives = 120/202 (59.41%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL---RTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +R G    +VG+PTS+ T   A   G+PL+ LD    +DL +DGADE+DP +NL KG GG+LLREK+V  A  + +VI DE+K V  LG     +P+EV+P+    T + + ++F   G   +L   +      FVTD G+++ D +L + I D    +  +  + GVVEHG+F+ +A   ++A   G+
Sbjct:   30 STAKHFVELLGERVRDG--LKVVGVPTSEATRADAERCGVPLTTLDDLDRLDLTVDGADEIDPDLNLTKGGGGALLREKIVAAASDRMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAITEVFAKAGVSGELAVRKRPDGHAFVTDGGHWIFDAHLGQ-IPDASYLAGLLNPIPGVVEHGLFIGLARVAMLAGAEGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPB (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB18) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.018e-33
Identity = 79/202 (39.11%), Postives = 124/202 (61.39%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL---RTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +R G   N+VG+PTS+ T   A+  GI L+ LD    +DL +DGADE++  +NL+KG GG+LLREK+V  A  + +VI DESKLV +LG     +P+EV  +    T + +++   +CG    L   + +    FVTD G++++D  L + I D    +D +  + GVVE+G+F+ +A+  ++A   G+
Sbjct:   30 STAKHFVELLGERVRGG--LNVVGVPTSEVTRADALRCGIALTTLDEVDRLDLTVDGADEINAALNLIKGGGGALLREKIVAAASDRMIVIADESKLVANLG--RFPLPIEVNSFGLAATLRAIEEACAECGVFGPLSLRKGSDGHAFVTDGGHWIVDAQLGR-IPDAPSLADQLNAIPGVVENGLFIGLASMAVLAGPNGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_NITHX (Ribose-5-phosphate isomerase A OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpiA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.018e-33
Identity = 79/202 (39.11%), Postives = 121/202 (59.90%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL---RTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +R G    +VG+PTS+ T   A   GIPL+ LD    +DL +DGADE+DP +NL+KG GG+LLREK+V  A ++ +VI DE+K V  LG     +P+EV+P+    T + + + F   G   ++   +      FVTD G+++ D +L + I D    +  +  + GVVEHG+F+ +A   ++A   G+
Sbjct:   30 STAKHFVELLGERVRDG--LKVVGVPTSEATRADAERCGIPLTTLDDLDRLDLTVDGADEIDPDLNLIKGGGGALLREKIVAAASERMIVIADETKWVAGLG--RFPLPIEVIPFGLAATRRAIAEAFTKAGASGQMVVRKGPDGLAFVTDGGHWIFDAHLGQ-IPDASHLAGLLNPIPGVVEHGLFIGLARVAMLAGAQGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPM (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M28 GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRP8 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M18 GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRP3 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M3 GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKNFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRP1 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M1 GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 93/203 (45.81%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GVT
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKNFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAES (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 84/199 (42.21%), Postives = 124/199 (62.31%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + +I EL++Q   T I G+ TS KT   A  L + + D++    +DLAIDGADEVD  +NL+KG GG+L REK++     +FVV+VDESKLV +LG +  A+PVEV  + W   AK+++  ++        R   D PF+TDNGNY++D  L+  I   ++  + ++ L GV+E G FLD+A  VIV ++ GV
Sbjct:   31 STIELLIPQIAELIQQKNYT-ITGVCTSNKTAFLAKELAMNIVDVNDVEKIDLAIDGADEVDSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYLGET-FALPVEVDKFNWYQVAKKIERTYD---IHVSRRVNEDVPFITDNGNYILDCSLQNRIPAYEL-HEFLIHLTGVLETGYFLDIADQVIVGTQEGV 223          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_STRP61.545e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_RHIL31.545e-3341.50Ribose-5-phosphate isomerase A OS=Rhizobium legumi... [more]
RPIA_NITWN1.545e-3339.11Ribose-5-phosphate isomerase A OS=Nitrobacter wino... [more]
RPIA_RHOPB2.018e-3339.11Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_NITHX2.018e-3339.11Ribose-5-phosphate isomerase A OS=Nitrobacter hamb... [more]
RPIA_STRPM2.636e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP82.636e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP32.636e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP12.636e-3345.81Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STAES2.636e-3342.21Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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