DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BUCBP (Ribose-5-phosphate isomerase A OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.237e-15
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = -2
Query:    4 LGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLD-MATTVIVASELGV 489
            +GIP+ DL     + L ID ADE++P + ++KG G +L REK++    +KF+ I DESK V  LG   + +P+E++P    + +  +  +    G + K R    +  +TDNGN +ID++    I D     + I    GVV  G+F    A   ++ +  GV
Sbjct:   63 IGIPIYDLSKINSLVLYIDSADEINPQLQMIKGGGAALTREKIIAATAEKFICIADESKQVEILG--KVPLPIEIIPMARSYISNEIIKI----GGMPKYR----KNVITDNGNVIIDVF-NLVITDPVCLENKINSFPGVVSVGLFATRKADIALIGTSSGV 214          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_CHRVO (Ribose-5-phosphate isomerase A OS=Chromobacterium violaceum GN=rpiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = -2
Query:   22 IPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 483
            I + DL+    + + IDGADE++  ++++KG G +L REK+V G   +F+ I DE K V  LG     +P+EV+P    + A+ L  L    G   +LR    Q   TDNGN ++D++  + +  +++  + I  +AGVV  G+F      V++
Sbjct:   66 IQVFDLNEVEKLSVYIDGADEINHHLHMIKGGGAALTREKIVAGVADEFICIADEKKYVTMLG--AFPLPIEVIPMARSYVARELVKL----GGHPELR----QGVTTDNGNVILDVHGLQIMKPVEL-EETINHIAGVVTCGLFARRRADVLL 208          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BORAP (Ribose-5-phosphate isomerase A OS=Borrelia afzelii (strain PKo) GN=rpiA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 58/195 (29.74%), Postives = 97/195 (49.74%), Query Frame = -2
Query:   25 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSY--PVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVI 600
            +T  HA+  + E L+ G L N+    TS  T        IP     S     +D+AIDGADE+     +L+KG GG+ L EK++    +  ++I DE+K+V  L G+ + +P+EV P    F   RL+++  D     ++      P +TDN NY++D  +K  + + +          G++E G+F    T ++
Sbjct:   29 TTVYHAIKYLSEKLKSGNLKNLKFYTTSSDTKYLLSKEQIPYESNFSKLNKNLDIAIDGADEILLEKKSLIKGMGGAHLMEKVIAYNSETLLIIADETKIVKKL-GTKMPIPIEVAPNAVGFIMTRLEEMNLD--ITLRICNEKKGPIITDNNNYILD--VKMHVENPEGTEKYFKLFPGILEIGIFNHKNTKIV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RALEJ (Ribose-5-phosphate isomerase A OS=Ralstonia eutropha (strain JMP134) GN=rpiA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 55/170 (32.35%), Postives = 89/170 (52.35%), Query Frame = -2
Query:   22 IPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQP-FVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 528
            + +S+ +  +    G  + DL+    + + +DGADE+D    ++KG GG+L REK+V     +FV I D SKLV  +G     +PVEV+P      A+++  L    G   +LR   D   + TDNGN ++D+   K I D +    +I ++ GVV  G+F      V++
Sbjct:   54 VSSSEASTRRLQQHGFKVLDLNEVDDIPVYVDGADEIDASGAMIKGGGGALTREKIVASVAGRFVCIADGSKLVETMG--AFPLPVEVIPMARAAVARQVAAL----GGQPRLRMNKDGGIYKTDNGNVILDVSGLK-ITDPRGLEQSINQIPGVVTVGLFALRGANVLL 216          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_METPP (Ribose-5-phosphate isomerase A OS=Methylibium petroleiphilum (strain PM1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = -2
Query:   49 IPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMF 528
            + +S K+ E+    GI + +  +   + + IDGADE+DP   ++KG G +L REK+V    ++FV I D SKLV  LG     +PVEV+P        ++Q  F   G  A +R    +  +TDNG  ++D+   + IGD       + +  GVV  G+F
Sbjct:   50 VSSSVKSTERLREKGIRVFEAAAVESLPVYIDGADEIDPHGCMIKGGGAALTREKIVADLAERFVCIADASKLVDVLG--RFPLPVEVLP----MAVSQIQRRFAKLGATATVR----EGVITDNGQLILDVQGLR-IGDPLAFETEVNQWPGVVTVGVF 198          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_AERPE (Ribose-5-phosphate isomerase A OS=Aeropyrum pernix GN=rpiA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = -2
Query:   22 VGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMN-LVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 534
            V +P+S +T  +   LG  + D   Y  V++ +DGADE +P    +VKG GG+LL EK++    K  + IV E +LV  L G    +PVEV P    F +  L  L E+ G   ++RT+  +  P V+D G  ++DL L   + D +     +  + GV E G+FL +A  ++V
Sbjct:   52 VAVPSSFETAVELAGLGWSVGDPRVYRGVNVYVDGADEAEPGRGYMVKGGGGALLGEKILSSRSKLNIFIVGEDRLVGRL-GEKTPVPVEVEP---GFVSMVLASL-EELGLNPRVRTSPGKRGPVVSDWGGVIVDL-LTGPLEDPRGLESMLRNVPGVRETGLFLGLADYIVV 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BORHD (Ribose-5-phosphate isomerase A OS=Borrelia hermsii (strain DAH) GN=rpiA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 59/196 (30.10%), Postives = 97/196 (49.49%), Query Frame = -2
Query:   25 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPL-SDLDSYPV-VDLAIDGADEVDPFMN-LVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL-FEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVI 600
            +T  +A+  + + ++ G L N+   PTS  T        I   S    +   +D+ IDGADE+      L+KG G + L EK++     + ++I DE+K+V  L G  +++P+E+VP    F    L+ + F       K +     P +TDN NY++D  +K +I + K A      L G++E G+F    T VI
Sbjct:   29 TTVFYAIKYLSDKIKSGDLKNLKLYPTSSDTKYLLAKENITYESKFTKFSKNIDITIDGADEILLEKKALIKGGGAAHLMEKIIAYNSHQLLIIADETKIVQTL-GEKVSVPIEIVPDALPFITANLEKMNFNPVLRTCKFKA---GPIITDNNNYILD--VKMNIENPKGAEKYFKLLPGILEIGIFNHQNTKVI 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BORBZ (Ribose-5-phosphate isomerase A OS=Borrelia burgdorferi (strain ZS7) GN=rpiA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 58/197 (29.44%), Postives = 97/197 (49.24%), Query Frame = -2
Query:   25 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSY--PVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVI 600
            +T  +A+  + E ++ G L N+    TS  T        IP     S     +D+AIDGADE+     +L+KG GG+ L EK++    +  ++I DE+K+V  L G+ + +P+EV      F   RL    E+    A LR   ++  P +TDN NY++D  +K  + + +          G++E G+F    T ++
Sbjct:   29 TTIYYAIKYLSEKIKSGSLKNLKFYTTSSDTKYLLSKEQIPYESNFSKLNKNLDIAIDGADEILLEKKSLIKGMGGAHLMEKVIAYNSETLLIIADETKIVKKL-GTKMPIPIEVAQNAVGFIMTRL----EEMNLEATLRICKEKKGPTITDNNNYILD--VKMHVENPEGTEKYFKLFPGILEIGIFNHKNTRIV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BORBU (Ribose-5-phosphate isomerase A OS=Borrelia burgdorferi GN=rpiA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 58/197 (29.44%), Postives = 97/197 (49.24%), Query Frame = -2
Query:   25 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSY--PVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVI 600
            +T  +A+  + E ++ G L N+    TS  T        IP     S     +D+AIDGADE+     +L+KG GG+ L EK++    +  ++I DE+K+V  L G+ + +P+EV      F   RL    E+    A LR   ++  P +TDN NY++D  +K  + + +          G++E G+F    T ++
Sbjct:   29 TTIYYAIKYLSEKIKSGSLKNLKFYTTSSDTKYLLSKEQIPYESNFSKLNKNLDIAIDGADEILLEKKSLIKGMGGAHLMEKVIAYNSETLLIIADETKIVKKL-GTKMPIPIEVAQNAVGFIMTRL----EEMNLEATLRICKEKKGPTITDNNNYILD--VKMHVENPEGTEKYFKLFPGILEIGIFNHKNTRIV 218          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_BUCBP3.237e-1532.52Ribose-5-phosphate isomerase A OS=Buchnera aphidic... [more]
RPIA_CHRVO7.211e-1533.12Ribose-5-phosphate isomerase A OS=Chromobacterium ... [more]
RPIA_BORAP1.230e-1429.74Ribose-5-phosphate isomerase A OS=Borrelia afzelii... [more]
RPIA_RALEJ2.098e-1432.35Ribose-5-phosphate isomerase A OS=Ralstonia eutrop... [more]
RPIA_METPP3.579e-1433.75Ribose-5-phosphate isomerase A OS=Methylibium petr... [more]
RPIA_AERPE1.041e-1334.48Ribose-5-phosphate isomerase A OS=Aeropyrum pernix... [more]
RPIA_BORHD3.957e-1330.10Ribose-5-phosphate isomerase A OS=Borrelia hermsii... [more]
RPIA_BORBZ1.964e-1229.44Ribose-5-phosphate isomerase A OS=Borrelia burgdor... [more]
RPIA_BORBU1.964e-1229.44Ribose-5-phosphate isomerase A OS=Borrelia burgdor... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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