DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAEQ (Ribose-5-phosphate isomerase A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 84/199 (42.21%), Postives = 124/199 (62.31%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + +I EL++Q   T I G+ TS KT   A  L + + D++    +DLAIDGADEVD  +NL+KG GG+L REK++     +FVV+VDESKLV +LG +  A+PVEV  + W   AK+++  ++        R   D PF+TDNGNY++D  L+  I   ++  + ++ L GV+E G FLD+A  VIV ++ GV
Sbjct:   31 STIELLIPQIAELIQQKNYT-ITGVCTSNKTAFLAKELAMNIVDVNDVEKIDLAIDGADEVDSALNLIKGGGGALFREKVIDEMADRFVVVVDESKLVNYLGET-FALPVEVDKFNWYQVAKKIERTYD---IHVSRRVNEDVPFITDNGNYILDCSLQNRIPAYEL-HEFLIHLTGVLETGYFLDIADQVIVGTQEGV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPS (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain BisB5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 80/202 (39.60%), Postives = 123/202 (60.89%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ---PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA+H V+ +GE +R G   +++G+PTS+ T   A   GI L+ LD    +DL +DGADEVD  + L+KG GG+LLREK+V  A  + +VI DESK V  LG     +PVEV+P+    T + ++  F   G   +L+    +    FVTD G++++D +L + I D    +  +  + GVVEHG+F+ +A+TV++A   G+
Sbjct:   30 STARHFVELLGEKVRGG--LDVIGVPTSEVTRADAERCGIRLTTLDEIDRLDLTVDGADEVDTRLELIKGGGGALLREKIVAAASDRMIVIADESKWVDCLG--KFPLPVEVIPFGLAATRRAIEKAFTQVGAAGQLKLRDGEAGHAFVTDGGHWIVDAHLGR-IPDAPRLAKLLSEIPGVVEHGLFIGIASTVVLAGTEGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS4 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.442e-33
Identity = 82/196 (41.84%), Postives = 123/196 (62.76%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK---LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   V  + E +R+  L  + G+PTS +T E A +LGI +  LD    +DL IDGADE D   NL+KG G +LL+EK+V  A  + VVI D +K V HLG     +PVEV+P+ W+ T   +++  E    + +   LR +GD P +TD  NY++DL+LK+ IG+ +  +  + ++AGVVE+G+F+D+  TV+V
Sbjct:   35 STAAWMVRCLAERVREEGL-RVQGVPTSTRTAELARALGIQVVTLDEAKWLDLTIDGADEFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLG--AFPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDAPLLTDEKNYILDLHLKR-IGEPRPLALALNQIAGVVENGLFIDICDTVVV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOP2 (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain HaA2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.442e-33
Identity = 80/202 (39.60%), Postives = 123/202 (60.89%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRT---TGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +R G   +++G+PTS+ T   A   GI L+ LD    +DL +DGADE+DP + L+KG GG+LLREK+V  A  + +VI DE+K V  LG     +PVEV+P+    T + ++    + G   +L+         FVTD G+++ID +L + I D    +  +  + GVVEHG+F+ +A+TV++A   G+
Sbjct:   30 STAKHFVELLGEKVRAG--LDVIGVPTSEVTRADAERCGIRLTTLDEIDRLDLTVDGADEIDPRLELIKGGGGALLREKIVAAASDRMIVIADETKWVDCLG--HFPLPVEVIPFGLAATRRAIEQACAEVGASGRLQLREGKDGHAFVTDGGHWIIDAHLGR-IPDAPRLAQLLSAIPGVVEHGLFIGIASTVVLAGTDGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRS7 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.496e-33
Identity = 88/203 (43.35%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASD---NILRLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  +++  L  +VG+ TS  T +QA  LGIPL+ +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VDESKLV HLG     +PVEVV Y     A RL  +FE  G     R  GD+  +TD  N++IDL    D+G ++   D    + +  GVVEHG+F  M   VIVA + GVT
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QVVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGADEVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLG--AFKLPVEVVQY----GADRLFRVFERAGYKPSFRMKGDKRLITDMQNFIIDL----DLGCIENPFDFGRLLDQTVGVVEHGLFNGMVDKVIVAGQAGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOSK (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.496e-33
Identity = 82/196 (41.84%), Postives = 122/196 (62.24%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK---LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   V  + E +R+  L  + G+PTS +T E A +LGI +  LD    +DL IDGADE D   NL+KG G +LL+EK+V  A  + VVI D +K V HLG     +PVEV+P+ W+ T   +++  E    + +   LR +GD P +TD  NY++DL+LK+ IG+ +     + ++AGVVE+G+F+D+  TV+V
Sbjct:   35 STAAWMVRCLAERVREEGL-RVQGVPTSTRTAELARALGIQVVTLDEAKWLDLTIDGADEFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLG--AFPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDAPLLTDEKNYILDLHLKR-IGEPRKLGLALNQIAGVVENGLFIDICDTVVV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS1 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.496e-33
Identity = 82/196 (41.84%), Postives = 122/196 (62.24%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK---LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   V  + E +R+  L  + G+PTS +T E A +LGI +  LD    +DL IDGADE D   NL+KG G +LL+EK+V  A  + VVI D +K V HLG     +PVEV+P+ W+ T   +++  E    + +   LR +GD P +TD  NY++DL+LK+ IG+ +     + ++AGVVE+G+F+D+  TV+V
Sbjct:   35 STAAWMVRCLAERVREEGL-RVQGVPTSTRTAELARALGIQVVTLDEAKWLDLTIDGADEFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLG--AFPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDAPLLTDEKNYILDLHLKR-IGEPRQLGLALNQIAGVVENGLFIDICDTVVV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRT1 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.871e-33
Identity = 91/201 (45.27%), Postives = 121/201 (60.20%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   V+ IG  +++  L+ +VG+ TS +T +QA  LGIPL  +D    +D+ +DGADEVDP +N +KG GG+LL EK+V    KK++ +VDESK+V  LG     +PVEVV Y     A RL   FE  G     R T  GD+ FVTD  N++IDL L K I +     D +  + GVVEHG+F  M   VIVA + GV
Sbjct:   28 STAYFFVEEIGRRIKEEGLS-VVGVTTSSQTTKQAEGLGIPLKSVDDIDSIDVTVDGADEVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLG--AFKLPVEVVQY----GADRLYLDFESKGYKPSFRVTEQGDR-FVTDMKNFIIDLDLGK-INNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGV 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPC (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.871e-33
Identity = 92/202 (45.54%), Postives = 119/202 (58.91%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GV
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRPB (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.871e-33
Identity = 92/202 (45.54%), Postives = 119/202 (58.91%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLK--VASDNIL-RLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  GD   VTD  NY+IDL    D+G +K  VA  ++L    GVVEHG+F  M   VIVAS+ GV
Sbjct:   28 STAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEGLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIKDPVAFGHLLDGTVGVVEHGLFNGMVDKVIVASKDGV 218          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_STAEQ2.636e-3342.21Ribose-5-phosphate isomerase A OS=Staphylococcus e... [more]
RPIA_RHOPS2.636e-3339.60Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_RHOS43.442e-3341.84Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_RHOP23.442e-3339.60Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_STRS74.496e-3343.35Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_RHOSK4.496e-3341.84Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_RHOS14.496e-3341.84Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_STRT15.871e-3345.27Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_STRPC5.871e-3345.54Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRPB5.871e-3345.54Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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