DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRTD (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.668e-33
Identity = 91/201 (45.27%), Postives = 121/201 (60.20%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   V+ IG  +++  L+ +VG+ TS +T +QA  LGIPL  +D    +D+ +DGADEVDP +N +KG GG+LL EK+V    KK++ +VDESK+V  LG     +PVEVV Y     A RL   FE  G     R T  GD+ FVTD  N++IDL L K I +     D +  + GVVEHG+F  M   VIVA + GV
Sbjct:   28 STAYFFVEEIGRRIKEEGLS-VVGVTTSTQTTKQAEGLGIPLKSVDDIDSIDVTVDGADEVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLG--AFKLPVEVVQY----GADRLYLDFESKGYKPSFRVTEQGDR-FVTDMKNFIIDLDLGK-INNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGV 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRT2 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.668e-33
Identity = 91/201 (45.27%), Postives = 121/201 (60.20%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT--GDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   V+ IG  +++  L+ +VG+ TS +T +QA  LGIPL  +D    +D+ +DGADEVDP +N +KG GG+LL EK+V    KK++ +VDESK+V  LG     +PVEVV Y     A RL   FE  G     R T  GD+ FVTD  N++IDL L K I +     D +  + GVVEHG+F  M   VIVA + GV
Sbjct:   28 STAYFFVEEIGRRIKEEGLS-VVGVTTSTQTTKQAEGLGIPLKSVDDIDSIDVTVDGADEVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLG--AFKLPVEVVQY----GADRLYLDFESKGYKPSFRVTEQGDR-FVTDMKNFIIDLDLGK-INNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGV 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STREM (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.002e-32
Identity = 87/203 (42.86%), Postives = 120/203 (59.11%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASD---NILRLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  +++  L  +VG+ TS  T +QA  LGIPL+ +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VDESKLV HLG     +PVEVV Y     A RL  +FE  G     R  GD+  +TD  N++IDL    D+G ++   +    + +  GVVEHG+F  M   VIVA + GVT
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QVVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGADEVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLG--AFKLPVEVVQY----GADRLFRVFERAGYKPSFRMKGDKRLITDMQNFIIDL----DLGCIENPCEFGRLLDQTVGVVEHGLFNGMVDKVIVAGQAGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PYRHO (Ribose-5-phosphate isomerase A OS=Pyrococcus horikoshii GN=rpiA PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.708e-32
Identity = 76/201 (37.81%), Postives = 122/201 (60.70%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKK--DIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST  + +  +GE L++G++++IVG+PTS +    A+   IP++ LD    +D+A+DGADEVDP +NL+KGRG +L  EK++      F+V+VDE KLV +L    + +P+EV+P  WK   + L     +     ++    D P +TDNGN++ID    +  D  D+++  + I    GV+E+G+F D+A  VIV +  GV
Sbjct:   30 STTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYL-CQKMPVPIEVIPQAWKAIIEELS--IFNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTI---PGVIENGIFADIADIVIVGTREGV 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_OLICO (Ribose-5-phosphate isomerase A OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.231e-32
Identity = 82/202 (40.59%), Postives = 123/202 (60.89%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STAKH V+ +GE +R G    +VG+PTS+ T   A   G+PL+ LD    +DL +DGADE+ P ++++KG GG+LLREK+V  A  + VVI D+SK V  LG     +PVEV+P+    T + L   F + G   +  LR   D   FVTD G++++D +L +     ++A+  +  + GVVEHG+F+ +A T I+A   G+
Sbjct:   30 STAKHFVELLGERVRAG--LRVVGVPTSEGTRADAERCGVPLTTLDDVDHLDLTVDGADEIAPSLDVIKGGGGALLREKIVAAASTRMVVISDDSKWVETLG--RFPLPVEVIPFGLGATRRALATAFAEAGVTGEITLRQGPDGHAFVTDGGHWILDAHLGRIPEPPRLAA-LLSAIPGVVEHGLFIGLAKTAILAGSQGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRE4 (Ribose-5-phosphate isomerase A OS=Streptococcus equi subsp. equi (strain 4047) GN=rpiA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.914e-32
Identity = 88/205 (42.93%), Postives = 118/205 (57.56%), Query Frame = -2
Query:    1 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYL-----KKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGVT 600
            STA + V+ IG  +++  L  +VG+ TS  T +QA  LGIPL+ +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VDESKLV HLG     +PVEVV Y     A RL  +FE  G     R  GD+  +TD  N++IDL L       + G L      + +  GVVEHG+F  M   VIVA + GVT
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QVVGVTTSSVTTKQAEGLGIPLTSIDDIDCIDLTVDGADEVDKAFNGIKGGGAALLMEKIVATPTKEYIWVVDESKLVDHLG--AFKLPVEVVQY----GADRLFRVFERAGYKPSFRMKGDKRLITDMQNFIIDLNLGCIENPCEFGRL------LDQTVGVVEHGLFNGMVDKVIVAGQAGVT 219          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SILPO (Ribose-5-phosphate isomerase A OS=Silicibacter pomeroyi GN=rpiA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.914e-32
Identity = 81/196 (41.33%), Postives = 124/196 (63.27%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL---FEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   V  +G+++R+  L  + G+PTS +T + A  +GI +  LD    +D+ IDGADE D  +NL+KG GG+LL+EK+V  A  + VVI D  K V  LG     +PVEV+P+ W+ T   L++     +  G  A LR  GD PFVTD GN+++DL+L++ IG+ +  +  + ++ GVVE+G+F+D+  TV+V
Sbjct:   35 STAAWLVRCLGDMVRKEGL-KMRGVPTSTRTAQLAREVGIEVITLDEARWLDITIDGADEFDGDLNLIKGGGGALLQEKIVATASDQMVVIADLGKEVSRLG--AFPLPVEVIPFGWQTTQALLEETLISMDVLGRTATLRMNGDTPFVTDEGNHILDLHLQR-IGNARQLALVLNQIPGVVENGLFIDICDTVVV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_GLOVI (Ribose-5-phosphate isomerase A OS=Gloeobacter violaceus GN=rpiA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.806e-32
Identity = 90/202 (44.55%), Postives = 121/202 (59.90%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDI--GDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA  AV  + E +R G    +VGIPTS++T  QA + GI L  L     VDL IDGADEV    + L+KG GG+LLREK+V  A ++ ++IVD +KLV  LG  G  +PVEV P+ W+ TA+ L+ L    G    LR    Q F+TD G+Y++D          +L+ A D   R+ GVVE G+F+ MA+ VIVA E G+
Sbjct:   30 STAAFAVSVLAERVRLG--LRVVGIPTSERTARQAEAEGIVLGTLAEQSRVDLTIDGADEVALGELALIKGLGGALLREKIVAAASERLIIIVDATKLVEQLGSHG-PLPVEVAPFGWQATARALERL----GAEVNLRAQHGQAFLTDGGHYILDCRFGPIARPAELEAAID---RIPGVVESGLFVGMASAVIVADEGGI 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_ROSS1 (Ribose-5-phosphate isomerase A OS=Roseiflexus sp. (strain RS-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 82/199 (41.21%), Postives = 115/199 (57.79%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   +  +   L  G+L  + G+PTS+ T   A  LGIPL+ LD  P +DLA+DGADE+DP + L+KG GG++LREK+V  +  +FVV+   SK V  LG     +PVEVV +     A+RL+ L    G  A  R     PFVTD GN ++D      I D +  + +I  + GVV HG+FL MA+  ++A   G+
Sbjct:   30 STATFMLYGLAARLADGRLQRVTGVPTSEVTAALARELGIPLTTLDRQPHLDLALDGADEIDPQLRLIKGLGGAMLREKIVAASAARFVVMAAVSKCVERLGERS-PLPVEVVAFGLPLCARRLKAL---GGAPALRRDRSGAPFVTDEGNLILDCNF-GIIADPEALAASICAIPGVVAHGLFLGMASLAVIAGPDGI 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHILO (Ribose-5-phosphate isomerase A OS=Rhizobium loti GN=rpiA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 78/201 (38.81%), Postives = 120/201 (59.70%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVA--KLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            +TA+  V  + + +  G    ++G+PTS++T      LG+PLS L+  P +DL +DGADEVDP + L+KG GG+LLREK+V  A ++ +VI D SK+V  LG     +P+EV  +  + T   +     D G      LR TG Q FVTD G++++D    + I D +  S+ +  + GVVEHG+F+ +A+T I+A   G+
Sbjct:   30 TTAEEFVRLLADKVATGM--TVIGVPTSERTAALCRELGVPLSTLEETPELDLTVDGADEVDPELTLIKGGGGALLREKIVAAASQRMIVIADRSKMVETLG--RFPLPIEVNQFGLRATEIAIAKTAADLGLSGPITLRMTGGQAFVTDGGHFILDASFGR-IPDTRALSNALHAIPGVVEHGLFIGLASTAIIAGGDGI 225          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_STRTD7.668e-3345.27Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_STRT27.668e-3345.27Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_STREM1.002e-3242.86Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_PYRHO1.708e-3237.81Ribose-5-phosphate isomerase A OS=Pyrococcus horik... [more]
RPIA_OLICO2.231e-3240.59Ribose-5-phosphate isomerase A OS=Oligotropha carb... [more]
RPIA_STRE42.914e-3242.93Ribose-5-phosphate isomerase A OS=Streptococcus eq... [more]
RPIA_SILPO2.914e-3241.33Ribose-5-phosphate isomerase A OS=Silicibacter pom... [more]
RPIA_GLOVI3.806e-3244.55Ribose-5-phosphate isomerase A OS=Gloeobacter viol... [more]
RPIA_ROSS16.492e-3241.21Ribose-5-phosphate isomerase A OS=Roseiflexus sp. ... [more]
RPIA_RHILO6.492e-3238.81Ribose-5-phosphate isomerase A OS=Rhizobium loti G... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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