DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_AGRRK (Ribose-5-phosphate isomerase A OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rpiA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 82/200 (41.00%), Postives = 119/200 (59.50%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGC--VAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G +  I G+PTS++T    V LG+PL  LD  P +DL IDGADEVD  + L+KG GG+LLREK+V  + ++ +VI DESK+V  LG    A+P+EV P+    T  +++      G      LR + D  F+TD G+++ID    + I D +  S  +  + GVVEHG+F++MAT  I+A   G
Sbjct:   30 STAEEFVRLLAEKVAAGLV--IEGVPTSERTARLCVDLGVPLKSLDELPELDLTIDGADEVDGALRLIKGGGGALLREKIVAASSQRMIVIADESKVVQTLG--AFALPIEVNPFGLVSTRIQIEKTAARLGLSGALNLRQSEDGNFMTDGGHFIIDASFGR-IPDAEALSIALNSIPGVVEHGLFINMATLAIIAGPSG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA2_OCEIH (Ribose-5-phosphate isomerase A 2 OS=Oceanobacillus iheyensis GN=rpiA2 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.492e-32
Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = -2
Query:   19 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVA 600
            ST    +  +   +R+ +L  +VGIP SKK+   A  LGIPL+   +Y  VD+AIDG DE+D  + LVKG GGSL+REKM+    + F+VI    K +  LG     +PVEVVP+ W+ T +RLQ      GC   LR   +  FV+DN NY+ID    K+I D +    ++ ++ GV+E G+F++M    IVA
Sbjct:   29 STVNEFLYCLAARMRKERL-QVVGIPASKKSERLATELGIPLTTFATYQNVDIAIDGTDEIDDQLYLVKGGGGSLVREKMIDLVAETFIVIASGKKKIKKLG--SFPVPVEVVPFGWQATEQRLQQF----GCQTNLRMVEEDIFVSDNQNYIIDCDF-KEIDDAEALHRSLKQIVGVIETGIFINMVDKAIVA 214          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAHJ (Ribose-5-phosphate isomerase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32
Identity = 84/199 (42.21%), Postives = 124/199 (62.31%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + ++ E + + +L NI G+ TS K+   A  L I + D++    VDLAIDGADEVD  +NL+KG GG+L REK++     +FVV+ DESKLV +LG S   +PVEV  + W   AK++ + F+D   + + R + D PF+TDNGNY++D  L K I D     + ++ L GV+E G FL++   VIV ++ GV
Sbjct:   31 STIELLIPKLAERIHKEQL-NITGVCTSNKSAFIAKKLDINVVDINDVGHVDLAIDGADEVDVNINLIKGGGGALFREKVIDEMAHRFVVLADESKLVNYLGES-FKLPVEVDKFNWFHIAKKI-EAFDD--IITERRMSDDVPFITDNGNYILDCQLNKQI-DPYQFHEYLIHLTGVLETGYFLNITDQVIVGTQDGV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SILST (Ribose-5-phosphate isomerase A OS=Silicibacter sp. (strain TM1040) GN=rpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32
Identity = 79/196 (40.31%), Postives = 124/196 (63.27%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL---FEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   V  +GE++R+  L  I G+PTS +T E A  +GI L  LD    +DL IDGADE D  +NL+KG GG+LL+EK+V  A  + VVI D++K V  LG     +P+EV+P+ W+ +   +++     +  G  + LR  G  P+VTD GN+++DL+L + IG+ +  +  + ++ GVVE+G+F+D+  TV++
Sbjct:   35 STAAWLVRCLGEMVREDGL-KITGVPTSARTAELAREVGIELITLDEARWLDLTIDGADEFDSELNLIKGGGGALLQEKIVATASDQMVVIADKAKEVETLG--AFPLPIEVIPFGWQTSQALVEETLISMDVMGRSSTLRMNGASPYVTDEGNHILDLHLNR-IGNPRQLALVLNQIPGVVENGLFIDICDTVVI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_ROSCS (Ribose-5-phosphate isomerase A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32
Identity = 82/200 (41.00%), Postives = 116/200 (58.00%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTT-GDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   +  +   L  G+L  +VG+PTS++T   A  LGIPL+ LD +P +DLA+DGADE+DP + L+KG GG++LREK+V  +  +FVV+   SK V  LG     +PVEVV +      +RL  L    G    LR      PFVTD GN ++D +    I D +  +  I  + GVV HG+FL MA+  ++A   G+
Sbjct:   30 STASFMLRGLAARLADGRLQRVVGVPTSEQTAVLARELGIPLTTLDRHPSLDLALDGADEIDPHLRLIKGLGGAMLREKIVAASAARFVVMASVSKRVERLGERS-PLPVEVVTFGMPLCIRRLAAL----GGEPVLRCDHSGAPFVTDEGNLILDCHFGV-IADPEALAAAICAIPGVVAHGLFLGMASLAVIAGPDGI 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_METRJ (Ribose-5-phosphate isomerase A OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpiA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.478e-32
Identity = 87/198 (43.94%), Postives = 118/198 (59.60%), Query Frame = -2
Query:   16 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCV--AKLRTTGD-QPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVAS 600
            STA   V  +GE +R G   +IVG+PTS+ T  QA SLGI L+ LD  P +DL IDGADEVD  + L+KG G +LLREK+V  A ++ VVI D +K V  LG     +PVEV P+  K T + ++      GC    +LR   D +P VTD G+Y++D  L   I D +     +  + GVVEHG+FL +A   I+A+
Sbjct:   30 STAAAFVALLGERVRAG--LDIVGVPTSEATRAQAESLGIRLATLDEQPELDLTIDGADEVDDRLRLIKGGGAALLREKIVACASRRMVVIADAAKHVARLG--AFPLPVEVNPFGLKATHRAVEAAVAGAGCSGDVRLRAQADGKPLVTDGGHYILDARLGA-IPDPEALGAALWAVPGVVEHGLFLGIADAAILAA 222          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_METB6 (Ribose-5-phosphate isomerase A OS=Methanoregula boonei (strain 6A8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.107e-31
Identity = 80/200 (40.00%), Postives = 120/200 (60.00%), Query Frame = -2
Query:   13 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMA--TTVIVASE 600
            ST  +A++ +   +R G   ++VG+PTS +T  +A   GIPL+ LD  PV+DLAIDGAD+ DP   L+KGRG ++ REK V  A  +F+V+VDE+K+V  L G    +PVE +P+  K    +L+ L    GC   +R     D P +TDNGN+++D    ++I D  +    I  + GV+E G+F  +   TT+IV +E
Sbjct:   35 STVFYAIECLSGRIRDG--LSVVGVPTSYQTAMKAREYGIPLTTLDDNPVLDLAIDGADQADPQFRLIKGRGAAITREKCVASAAFRFIVVVDEAKMVKKLAG---VVPVETLPFATKTALAQLRGL----GCRPFIREAVKKDGPVITDNGNFIVDCQF-EEIPDPALLEAGIAAIPGVIESGLFTRLTGNTTIIVGNE 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAAW (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain MW2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + ++ +L+++ +  NI G+ TS K    A  LGI + +++    +DLAIDGADEVDP +N++KG GG+L REK++     +FVV+VDE+K+V +LG +   +PVEV  + W    ++++   +      + R   D  F+TDNGNY++D  L K I   K   + ++ L GV E G FLDMA  VIV ++ GV
Sbjct:   31 STMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGET-FKLPVEVDKFNWYHILRKIESYAD---IKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAAS (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain MSSA476) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + ++ +L+++ +  NI G+ TS K    A  LGI + +++    +DLAIDGADEVDP +N++KG GG+L REK++     +FVV+VDE+K+V +LG +   +PVEV  + W    ++++   +      + R   D  F+TDNGNY++D  L K I   K   + ++ L GV E G FLDMA  VIV ++ GV
Sbjct:   31 STMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGET-FKLPVEVDKFNWYHILRKIESYAD---IKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAAR (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain MRSA252) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + ++ +L+++ +  NI G+ TS K    A  LGI + +++    +DLAIDGADEVDP +N++KG GG+L REK++     +FVV+VDE+K+V +LG +   +PVEV  + W    ++++   +      + R   D  F+TDNGNY++D  L K I   K   + ++ L GV E G FLDMA  VIV ++ GV
Sbjct:   31 STMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKMVQYLGET-FKLPVEVDKFNWYHILRKIESYAD---IKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGV 223          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_AGRRK6.492e-3241.00Ribose-5-phosphate isomerase A OS=Agrobacterium ra... [more]
RPIA2_OCEIH6.492e-3241.24Ribose-5-phosphate isomerase A 2 OS=Oceanobacillus... [more]
RPIA_STAHJ8.478e-3242.21Ribose-5-phosphate isomerase A OS=Staphylococcus h... [more]
RPIA_SILST8.478e-3240.31Ribose-5-phosphate isomerase A OS=Silicibacter sp.... [more]
RPIA_ROSCS8.478e-3241.00Ribose-5-phosphate isomerase A OS=Roseiflexus cast... [more]
RPIA_METRJ8.478e-3243.94Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]
RPIA_METB61.107e-3140.00Ribose-5-phosphate isomerase A OS=Methanoregula bo... [more]
RPIA_STAAW1.889e-3139.20Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STAAS1.889e-3139.20Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STAAR1.889e-3139.20Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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