DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAAN (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain N315) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + ++ +L+++ +  NI G+ TS K    A  LGI + +++    +DLAIDGADEVDP +N++KG GG+L REK++     +FVV+VDE+K+V +LG +   +PVEV  + W    ++++   +      + R   D  F+TDNGNY++D  L K I   K   + ++ L GV E G FLDMA  VIV ++ GV
Sbjct:   31 STMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGET-FKLPVEVDKFNWYHILRKIESYAD---IKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAAM (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.889e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + ++ +L+++ +  NI G+ TS K    A  LGI + +++    +DLAIDGADEVDP +N++KG GG+L REK++     +FVV+VDE+K+V +LG +   +PVEV  + W    ++++   +      + R   D  F+TDNGNY++D  L K I   K   + ++ L GV E G FLDMA  VIV ++ GV
Sbjct:   31 STMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGET-FKLPVEVDKFNWYHILRKIESYAD---IKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRU0 (Ribose-5-phosphate isomerase A OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.467e-31
Identity = 87/199 (43.72%), Postives = 116/199 (58.29%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA   V+ IG  + +  L  +VG+ TS  T +QA SLGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VDESK+V  LG     +PVEVV Y     A+RL  +FE  G     R   DQ  +TD GN++IDL LK      + A + + +  GVVEHG+F  M   VIVA + GV
Sbjct:   28 STAYFFVEEIGRRVNEEGL-QVVGVTTSSATTKQAESLGIPLKAVDEIDEIDLTVDGADEVDKEFNGIKGGGAALLMEKIVATPTKEYIWVVDESKMVEKLG--AFKLPVEVVQY----GAERLFRVFEKAGYNPSFRMKEDQKLITDMGNFIIDLDLKVIEKPFEFA-EMLDKTVGVVEHGLFNGMVHKVIVAGKDGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STRGC (Ribose-5-phosphate isomerase A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.467e-31
Identity = 84/199 (42.21%), Postives = 116/199 (58.29%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA + V+ IG  +++  L  I+ + TS  T +QA  LGIPL  +D   +VD+ +DGADEVDP  N +KG GG+LL EK+V    K ++ +VDESKLV  LG     +PVEVV Y     A+++   FE  G     R    Q FVTD  N++IDL L      ++ A + +  + G+VEHG+F  M   VIVA + GV
Sbjct:   28 STAYYFVEEIGRRIKEEGL-QIIAVTTSSVTSQQAEGLGIPLKSIDEVDLVDVTVDGADEVDPNFNGIKGGGGALLMEKVVATPTKSYIWVVDESKLVEKLG--AFKLPVEVVQY----GAEQVFRRFERAGYKPAFRQKDGQRFVTDMKNFIIDLDLGVIENPIEFARE-LDHIVGIVEHGLFNQMVDKVIVAGKAGV 218          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_ROSDO (Ribose-5-phosphate isomerase A OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.467e-31
Identity = 81/196 (41.33%), Postives = 120/196 (61.22%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL---FEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   V  +G+ +R   L  I G+PTS +T E A  +GI +  LD+   +DL IDGADE D   NL+KG GG+LL EK+V  +  + VVI D  K V  LG     +P+EV+P+  + T   + +     +  G  + LR  GD+PFVTD GN++IDL+LK+ IGD +  +  + ++ GVVE+G+F+D+  TV++
Sbjct:   35 STAAWLVRCLGQRVRNEGL-QITGVPTSTRTAELAREVGIDIITLDAAKRLDLTIDGADEFDGAFNLIKGGGGALLHEKVVAASSDRMVVIADVGKEVETLG--AFPLPIEVIPFGLQTTHALVDETLVSMDVLGRDSSLRMDGDKPFVTDEGNHIIDLHLKR-IGDARQLALTLNQVPGVVENGLFIDICDTVVL 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LISMO (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.467e-31
Identity = 73/198 (36.87%), Postives = 124/198 (62.63%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST  + ++++GE++  G   +I G+ TS++T++QA +LGIPL  L+    +D+ IDGADE+D     +KG GG+LLREKMV  A  K + +V E KLV +LG     +P+EV+P+ WK   ++L+   E      + +++G + +VT+NGNY++D+ + +   D ++  + + ++ G+VEHG+FL     +I A   G
Sbjct:   28 STVYYTIEKLGEMVNNG--LHITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPLEVIPFGWKQVERKLEK--EHIQTNLRKQSSG-EVYVTNNGNYILDI-VNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANG 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LISMF (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.467e-31
Identity = 72/198 (36.36%), Postives = 123/198 (62.12%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST  + ++++GE++  G   +I G+ TS++T +QA +LGIPL  L+    +D+ IDGADE+D     +KG GG+LLREKMV  A  K + +V E KLV +LG     +P+EV+P+ WK   + L+   E    + + +++G + +VT+NGNY++D+ + +   D ++  + + ++ G+VEHG+FL     ++ A   G
Sbjct:   28 STVYYTIEKLGEMVNNG--LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPIEVIPFGWKQIERTLEK--EHIQTILRRQSSG-EIYVTNNGNYILDI-VNQTFRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAKANG 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_LISMC (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpiA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.467e-31
Identity = 72/198 (36.36%), Postives = 123/198 (62.12%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST  + ++++GE++  G   +I G+ TS++T +QA +LGIPL  L+    +D+ IDGADE+D     +KG GG+LLREKMV  A  K + +V E KLV +LG     +P+EV+P+ WK   + L+   E    + + +++G + +VT+NGNY++D+ + +   D ++  + + ++ G+VEHG+FL     ++ A   G
Sbjct:   28 STVYYTIEKLGEMVNNG--LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPIEVIPFGWKQIERTLEK--EHVQTILRRQSSG-EIYVTNNGNYILDI-VNQTFRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAKANG 217          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_STAAC (Ribose-5-phosphate isomerase A OS=Staphylococcus aureus (strain COL) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.222e-31
Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            ST +  + ++ +L+++ +  NI G+ TS K    A  LGI + +++    +DLAIDGADEVDP +N++KG GG+L REK++     +FVV+VDE+K+V +LG +   +PVEV  + W    ++++   +      + R   D  F+TDNGNY++D  L K I   K   + ++ L GV E G FLDMA  VIV ++ GV
Sbjct:   31 STMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGET-FKLPVEVDKFNWYQILRKIESYAD---IKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKF-HEYLIHLTGVFETGYFLDMADQVIVGTQEGV 223          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHISN (Ribose-5-phosphate isomerase A OS=Rhizobium sp. (strain NGR234) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.222e-31
Identity = 80/200 (40.00%), Postives = 116/200 (58.00%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    I G+PTS++T    + LG+PL  LD  P +DL IDGADEVD  + L+KG GG+LLREK+V  A ++ +VI DESK+V  LG     +P+EV  +    T   ++ +    G      LR +GD PF+TD G+ ++D    + I D +  +  +  + GVVEHG+FL MA+  I+A   G
Sbjct:   30 STAEEFVRLLAEKVASG--FQIQGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASERMIVIADESKVVDVLG--AFKLPIEVNQFGLTTTRLAIEKVAARLGLTGDIGLRASGDGPFMTDGGHLILDASFGR-IPDAEALAAGLNAIPGVVEHGLFLGMASLAIIAGPEG 224          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_STAAN1.889e-3139.20Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STAAM1.889e-3139.20Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_STRU02.467e-3143.72Ribose-5-phosphate isomerase A OS=Streptococcus ub... [more]
RPIA_STRGC2.467e-3142.21Ribose-5-phosphate isomerase A OS=Streptococcus go... [more]
RPIA_ROSDO2.467e-3141.33Ribose-5-phosphate isomerase A OS=Roseobacter deni... [more]
RPIA_LISMO2.467e-3136.87Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMF2.467e-3136.36Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMC2.467e-3136.36Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_STAAC3.222e-3139.20Ribose-5-phosphate isomerase A OS=Staphylococcus a... [more]
RPIA_RHISN3.222e-3140.00Ribose-5-phosphate isomerase A OS=Rhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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