DC887593

Overview
NameDC887593
Unique NameDC887593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_THEEB (Ribose-5-phosphate isomerase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.208e-31
Identity = 83/195 (42.56%), Postives = 117/195 (60.00%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            ST    +  +G+ LR+G+L+NIVG+PTS +    A   GIPL  LD    +D+AIDGADEVDP  NL+KG G +  REK+V    ++F+V+VD SKLV  L GS   +PVEV+P+      + L+ L    G   +LR     D P VTD GN+V+D+    DI D       I  + GVVE+G+F+++A  ++V
Sbjct:   33 STTAFVIQFLGDRLRKGELSNIVGVPTSFQASVLAKKYGIPLVTLDDVEKLDIAIDGADEVDPAKNLIKGGGAAHTREKIVDSLAEQFLVVVDSSKLVQKL-GSTFPVPVEVLPFAVAPVTRALKAL----GGEPELRMGVKKDGPVVTDQGNFVLDVRF-DDIPDPAELEKAINNIPGVVENGLFVNVADVILV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_BRUME (Ribose-5-phosphate isomerase A OS=Brucella melitensis GN=rpiA PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.208e-31
Identity = 77/201 (38.31%), Postives = 118/201 (58.71%), Query Frame = -2
Query:    4 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVA--KLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELGV 600
            STA+  V  + E ++ G    ++G+PTS++T +    LG+ L+ L+  P +DL IDGADEVD  ++L+KG GG+LLREK+V  A    +VI D+SK+V  LG     +P+EV  +    T + ++     CG      LR     PF+TD G+Y++D    + I D K  SD +  + GVVEHG+F+++A   I+A   G+
Sbjct:   31 STAEEFVRLLAEKVKGG--FRVIGVPTSERTAKLCEELGVALTTLEETPHLDLTIDGADEVDGELSLIKGGGGALLREKIVAAASDSMIVIADQSKVVETLG--RFPLPIEVNRFGLGATIRAIEAAAVKCGLAGPLNLRLKDGSPFLTDGGHYIVDASFGR-IPDPKTLSDALFAIPGVVEHGLFIELARAAIIAGTDGI 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SINMW (Ribose-5-phosphate isomerase A OS=Sinorhizobium medicae (strain WSM419) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 78/200 (39.00%), Postives = 116/200 (58.00%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL--RTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    I G+PTS++T    + LG+PL  LD  P +DL IDGADEVD  + L+KG GG+LLREK+V  A  + +VI DE+K+V  LG     +P+EV P+    T   ++ +    G    +  R +GD PF+TD G+ ++D    + I D    +  +  + GVVEHG+F++MA+  I+A   G
Sbjct:   30 STAEEFVRVLAEKVASG--FQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASARMIVIADETKVVDVLG--AFKLPIEVNPFGQLATRLAIEKVASRLGLTGDIVVRASGDGPFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIEMASMAIIAGPEG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS5 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 79/196 (40.31%), Postives = 119/196 (60.71%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL---FEDCGCVAKLRTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   V  + E +R+  L  + G+PTS +T E A  LGIP+  LD    +DL IDGADE D   NL+KG G +LL+EK+V  A  + +VI D +K V  LG     +PVEV+P+ W+ T   +++     +  G    LR +G+ P +TD  NY++DL+L + IG  +  +  + ++AGVVE+G+F+D+  TV+V
Sbjct:   35 STAAWMVRCLAERVREEGL-RVQGVPTSSRTAELARELGIPVVTLDEARWLDLTIDGADEFDSEFNLIKGGGAALLQEKIVATASDRMIVIADAAKEVAQLG--AFPLPVEVIPFGWQSTRMLIEEALIGLDVLGREVTLRRSGEAPLLTDEKNYILDLHLTR-IGHPRQLALTLNQIAGVVENGLFIDICDTVVV 226          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROMM (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain MIT 9313) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 80/195 (41.03%), Postives = 114/195 (58.46%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +G  L  G+L +IVG+ TS +    A  LGIPL +L +   +DLAIDGADEVDP   L+KG G   ++EK+V     +FVV+VD +K+V  L   G  +PVEV+P  W+    RL +L    G +A LR    +  P VTD GN V+D+ +   IGD +     I  L GV+E+G+F+++   V+V
Sbjct:   32 STAALMIQALGAKLASGELRDIVGVTTSFQGEVMAAELGIPLRNLTAVDRIDLAIDGADEVDPSFQLIKGGGACHVQEKLVASRADRFVVVVDSTKIVDRL-NLGFLLPVEVLPGAWRQVQGRLAEL----GGIADLRMAQCKAGPVVTDQGNLVLDVSMAGGIGDPEDLECRINNLPGVLENGLFVNLTDEVLV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROMA (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 78/195 (40.00%), Postives = 109/195 (55.90%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +GE L++G L  I+G+PTS +    A  LGIPL    +   +DLAIDGADEVDP   L+KG G   ++EK+V     +FVV+VD +K+V  L      +PVEV+P  WK   K L DL    G  + LR    +  P VTD GN V+D+     I D +     I    GV+E+G+F+++   V+V
Sbjct:   32 STAALMIKSLGEKLKEGSLKEIIGVPTSFQGEVLASQLGIPLRAFSAVSKIDLAIDGADEVDPNFQLIKGGGACHVQEKLVASIADRFVVVVDSTKIVEKL-NLEFKLPVEVLPAAWKLVQKELNDL----GAKSDLRMAEKKAGPIVTDQGNLVLDVQFADGISDPQNLEKQINNFPGVLENGLFVNLTDEVLV 221          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PROM9 (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain MIT 9312) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 77/195 (39.49%), Postives = 115/195 (58.97%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  + + +R GKL NI G+ TS ++   A+ L IPL DL S   +DLAIDGADEVDP   L+KG G   +REK+V     + +++VDE+KLV  L  S   +PVEV+P  W    K++Q++  +   ++ LR  T    P VTD GN ++D+     I + K    +I  + GV+E+G+F+D+   V+V
Sbjct:   31 STAVLMIKSLADAIRSGKLQNIKGVATSFQSEVLALELDIPLIDLASVSQIDLAIDGADEVDPGFQLIKGGGACHVREKLVASKANQLLIVVDETKLVRKLNQS-FPLPVEVLPNAW----KQVQEVISEMNGISTLRMATKKAGPVVTDQGNLILDVLFNDGIKNPKDIEKSINNIPGVLENGLFIDLTDKVLV 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_PEDPA (Ribose-5-phosphate isomerase A OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 88/202 (43.56%), Postives = 119/202 (58.91%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQPFV-TDNGNYVIDLYLKKDIGDLK---VASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            ST K  VD +GE ++   L NIVG+PTS +T EQA SLGI +  +D    +DL IDGADE+      +KG G + L EK+V    KK + IVDESK+V HLG     +P+EV+PY  K   K+L    E  G   + R      +V TD+ NYVIDL+L    G++K     +D +++  G+VE G+FLDM  TVIV  + G
Sbjct:   30 STVKFMVDALGERVKNENL-NIVGVPTSDRTAEQARSLGINVKSVDEVDHIDLTIDGADEISSDFQGIKGGGAAHLFEKIVATNSKKVMWIVDESKMVDHLG--AFPLPLEVIPYGSKQVFKKL----EKEGLHPEFRKNDAGEYVLTDSKNYVIDLHL----GEIKHPHQLADYLIKQVGIVEQGLFLDMVNTVIVGRQNG 220          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_AGRT5 (Ribose-5-phosphate isomerase A OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.495e-31
Identity = 78/200 (39.00%), Postives = 118/200 (59.00%), Query Frame = -2
Query:    7 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL--RTTGDQPFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIVASELG 600
            STA+  V  + E +  G    + G+PTS++T    V LG+PL  LD  P +DL IDGADEVD  + LVKG GG+LLREK+V  A  + +VI D+SK+V  LG     +P+E+ P+    T   ++ L    G   +L  R++GD  F+TD G+ ++D    + I D +  +  +  + GVVEHG+F+++A+  I+A   G
Sbjct:   30 STAEEFVRLLAEKVAAG--LKVEGVPTSERTARLCVELGVPLKSLDELPELDLTIDGADEVDHVLRLVKGGGGALLREKIVAAASGRMIVIADQSKVVETLG--AFPLPIEINPFGQVATRIAIEKLAARSGLSGELTMRSSGDGAFMTDGGHLILDASFGR-IPDAEALARELNTIPGVVEHGLFINLASLAIIAGPEG 224          
BLAST of DC887593 vs. ExPASy Swiss-Prot
Match: RPIA_SYNR3 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain RCC307) GN=rpiA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.177e-31
Identity = 81/195 (41.54%), Postives = 112/195 (57.44%), Query Frame = -2
Query:   22 STAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVVGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGDQ--PFVTDNGNYVIDLYLKKDIGDLKVASDNILRLAGVVEHGMFLDMATTVIV 600
            STA   +  +G  LR G+LT+IVG+ TS +    A  LGIPL  L++   +DLAIDGADEVDP   L+KG G   ++EK+V    ++FVV+VD +KLV  L   G  +PVEV+   W+     LQ L    G  A+LR    +  P VTD GN V+D+     I D       I  + GV+E+G+F+ +A  V+V
Sbjct:   32 STAALMIQEVGARLRDGRLTDIVGVTTSFQGEVLAAELGIPLQSLNAIDRIDLAIDGADEVDPAFELIKGGGACHVQEKLVARRAERFVVVVDSTKLVERL-NLGFLLPVEVLAGAWRQVQAELQQL----GGSAELRMAQRKAGPVVTDQGNLVLDVSFAGGINDPAGLETTINNIPGVLENGLFVGLADQVLV 221          
The following BLAST results are available for this feature:
BLAST of DC887593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_THEEB4.208e-3142.56Ribose-5-phosphate isomerase A OS=Thermosynechococ... [more]
RPIA_BRUME4.208e-3138.31Ribose-5-phosphate isomerase A OS=Brucella meliten... [more]
RPIA_SINMW5.495e-3139.00Ribose-5-phosphate isomerase A OS=Sinorhizobium me... [more]
RPIA_RHOS55.495e-3140.31Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_PROMM5.495e-3141.03Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_PROMA5.495e-3140.00Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_PROM95.495e-3139.49Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_PEDPA5.495e-3143.56Ribose-5-phosphate isomerase A OS=Pediococcus pent... [more]
RPIA_AGRT55.495e-3139.00Ribose-5-phosphate isomerase A OS=Agrobacterium tu... [more]
RPIA_SYNR37.177e-3141.54Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]

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Properties
Property NameValue
Genbank descriptionDC887593 EIC Citrus sinensis cDNA clone EIC0605 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887593 ID=DC887593; Name=DC887593; organism=Citrus sinensis; type=EST; length=601bp
TGTAACGCCGAGCTCGCTTGCTACAATCACAGTAGTAGCCATATCAAGAA
ACATCCCGTGCTCAACAACACCGGCAAGCCGCAAAATGTTGTCGCTTGCA
ACTTTCAAATCGCCAATGTCTTTCTTCAAATACAAATCAATAACGTAGTT
GCCATTATCGGTGACAAACGGCTGGTCACCGGTGGTTCTGAGCTTGGCAA
CACAGCCACAATCCTCAAACAAATCCTGAAGCCTCTTGGCCGTAAACTTC
CAACAGTACGGCACCACTTCAACGGGCATGGCCAGGCCGCTCCCTCCGAG
ATGAGGCACCAGCTTGGACTCGTCGACAATAACAACAAACTTCTTACAGG
CACCCACCACCATCTTCTCCCTCAACAAGGACCCACCCCGGCCTTTGACC
AAATTCATGAAGGGATCGACTTCGTCAGCGCCGTCGATTGCCAAATCAAC
GACGGGATACGAGTCAAGATCTGAGAGAGGAATACCGAGCGAAACGGCCT
GTTCGTGAGTCTTCTTGGAGGTGGGTATCCCCACAATGTTGGTGAGCTTG
CCTTGGCGCAACAACTCGCCGATTCTGTCAACGGCGTGCTTGGCGGTGGA
G
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