DC887588

Overview
NameDC887588
Unique NameDC887588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.224e-30
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  217 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 594
            +PLPNV   IL KV+++C  H + P   +                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:   45 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.652e-30
Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = -2
Query:  226 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQW 594
            IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP        EN+W
Sbjct:   41 IPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.652e-30
Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = -2
Query:  226 IPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQW 594
            IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP        EN+W
Sbjct:   41 IPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.036e-29
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKV--DQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            NG+P+ NVTG IL+KV+EYCKKHV   +  +                +++LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP        ENQWAFE
Sbjct:   39 NGVPIANVTGVILSKVIEYCKKHVVSDSPTEES--------------KDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.354e-29
Identity = 70/128 (54.69%), Postives = 80/128 (62.50%), Query Frame = -2
Query:  217 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 600
            NGIPLP VTGKIL  V+EYC KH  V A                   +EDLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND+T         ENQW FE
Sbjct:   40 NGIPLPEVTGKILEMVIEYCNKH-HVDAANPCS--------------DEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
The following BLAST results are available for this feature:
BLAST of DC887588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1_MOUSE1.224e-3053.97S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA1.224e-3053.97S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN1.224e-3053.97S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK1.224e-3053.97S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO1.224e-3053.97S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN1.224e-3053.97S-phase kinase-associated protein 1 OS=Bos taurus ... [more]
SKP1B_DICDI4.652e-3055.28SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
SKP1A_DICDI4.652e-3055.28SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK13_ARATH1.036e-2952.31SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH1.354e-2954.69SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionDC887588 EIC Citrus sinensis cDNA clone EIC0597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887588 ID=DC887588; Name=DC887588; organism=Citrus sinensis; type=EST; length=601bp
TCCACGGTCTTGATAGCAAGCAGGAAAGGATGGACCAGACCAACTGCTAC
CAGTTCCACCAGAACAGACTATTATTTACATTTCAAACAGCTAATAAGTT
CGAAAGTACAATGAGAAAGGAAAAGATAAGCCCTAGAAAACTACATCTAC
ATGTTAAAGACAGCAAGATTGCAAGACAATGATAATGAAAAATTGTCTTT
GTTGAAACAACTTTCACTCAAAAGCCCACTGGTTCTCCCTACGGACCTCT
TCTTCCTCCTCTGGAGTGAAGTCATTCTTGATGTTAAAGGTCTTTCGAAT
CTCCTCCGGAGTCTTTCCCTTGATCATGTCAGCAACAGTCTGGCAGGTAA
GGTCCAGCAGCCCCTTGATGTTCAGGTAGTTTGCTGCCAGGATGAGATCG
AAGAGAGTGGCCTGGTCAACTTTGACGAAGTCAGTGTCCCAGCTTTTGAG
ATCCTCCTCACCACCGTTAGTGGCAGTACCGTTGCTGTTGGCGCCGCTGT
TGTTGCTATCCTGGGTCGCAGGAACCTCCACGTGTTTCTTGCAATACTCA
ACCACCTTCGCCAGGATCTTGCCCGTCACGTTCGGTAACGGGATGCCGTT
A
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