DC887588

Overview
NameDC887588
Unique NameDC887588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 45/86 (52.33%), Postives = 55/86 (63.95%), Query Frame = -2 
Query:  346 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFV-KVDQATLFDLILAANYLNIKGLLDLT 600
            NGIPLPNVT KIL  V+EYCKKHV                       EEDLK WD +F+ K++Q+ LFD+++AANYLNI+ LLDLT
Sbjct:   14 NGIPLPNVTSKILLLVIEYCKKHV-------------------VESKEEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80
[Close]
BLAST of DC887588 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = -2 
Query:  322 NGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMI 600
            N IP+ NVT +IL  V+EYC KH  V A                   +EDLK WD +F++ DQ T+F L+ AA  L+IK LL L  QTVADM+
Sbjct:   40 NVIPVSNVTSEILEMVIEYCNKH-HVDAANPCS--------------DEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117
The following BLAST results are available for this feature:
BLAST of DC887588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ASK6_ARATH6.522e-1652.33SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK7_ARATH9.746e-1245.16SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionDC887588 EIC Citrus sinensis cDNA clone EIC0597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887588 ID=DC887588; Name=DC887588; organism=Citrus sinensis; type=EST; length=601bp
TCCACGGTCTTGATAGCAAGCAGGAAAGGATGGACCAGACCAACTGCTAC
CAGTTCCACCAGAACAGACTATTATTTACATTTCAAACAGCTAATAAGTT
CGAAAGTACAATGAGAAAGGAAAAGATAAGCCCTAGAAAACTACATCTAC
ATGTTAAAGACAGCAAGATTGCAAGACAATGATAATGAAAAATTGTCTTT
GTTGAAACAACTTTCACTCAAAAGCCCACTGGTTCTCCCTACGGACCTCT
TCTTCCTCCTCTGGAGTGAAGTCATTCTTGATGTTAAAGGTCTTTCGAAT
CTCCTCCGGAGTCTTTCCCTTGATCATGTCAGCAACAGTCTGGCAGGTAA
GGTCCAGCAGCCCCTTGATGTTCAGGTAGTTTGCTGCCAGGATGAGATCG
AAGAGAGTGGCCTGGTCAACTTTGACGAAGTCAGTGTCCCAGCTTTTGAG
ATCCTCCTCACCACCGTTAGTGGCAGTACCGTTGCTGTTGGCGCCGCTGT
TGTTGCTATCCTGGGTCGCAGGAACCTCCACGTGTTTCTTGCAATACTCA
ACCACCTTCGCCAGGATCTTGCCCGTCACGTTCGGTAACGGGATGCCGTT
A
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