DC887584
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35 Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G AGRKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS +RK RVQLIKNGK AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35 Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G AGRKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS +RK RVQLIKNGK AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.549e-35 Identity = 76/137 (55.47%), Postives = 101/137 (73.72%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G+ A RKL+ R + RW+ + +K+ L + K P G+ A+GIVLEK+G+EA++PNSA+RKC RVQL+KNGK AFVP DG LN I E+DEV+I G G +G ++GDIPGVR+KVV V+GVSL A+ K KK+KP Sbjct: 9 GLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAILKGKKQKP 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 5.941e-35 Identity = 75/138 (54.35%), Postives = 104/138 (75.36%), Query Frame = -2 Query: 166 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 573 +G+ A RKL+ R + W+ +S+K+ L + K P G+ A+GIVLEK+GIE++QPNSA+RK RVQL+KNG+ AFVP DG +N+I+E+DEV+IAG G G ++GD+PGVR+KVV V+GVSL AL+K KK+KP Sbjct: 8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.013e-34 Identity = 74/138 (53.62%), Postives = 103/138 (74.64%), Query Frame = -2 Query: 166 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 573 +GM A RKL+ R + RW + +K+ L + K P G+ A+G+VLEK+GIE++QPNSA+RK RVQL+KNG+ AFVP DG +N+I+E+DEV+IAG G G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 8 KGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.323e-34 Identity = 75/145 (51.72%), Postives = 104/145 (71.72%), Query Frame = -2 Query: 163 TNMGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 591 T G+ A RKL+ R + RW+++ +K LG + K P G+ A+GIVLEK+G+EA+QPNSA+RKC RVQLIKNG+ AFVP DG L ++E+DEVLI G G +G ++GDIPGVR++VV V+GVSL A+ + +K+KP+ Sbjct: 2 TGKKSPNGLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 2.257e-34 Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = -2 Query: 169 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 573 RG+ A RKL +R++ RW+D+ + + LG K P G+ A+GIVLEKIGIEA+QPNSAIRK RVQLIKNG++ AF P DG +N+I+E+DEV++ GR G ++GDIPGVR+KVVKV+ SL L + +KEK Sbjct: 3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLRELVRGRKEK 139
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 2.948e-34 Identity = 72/137 (52.55%), Postives = 98/137 (71.53%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G+ A RK++ ++ RW+D Y + LG + K P G+ A+GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++ AF P DG + +I+E+DEV++ GR G ++GDIPGVRFKVV V+ VSL + +KEKP Sbjct: 4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 2.948e-34 Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = -2 Query: 163 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 570 G A +L+ R+ RW D Y + LG + K P +G+ +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL + +KEKPR Sbjct: 4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141
BLAST of DC887584 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.029e-34 Identity = 74/137 (54.01%), Postives = 97/137 (70.80%), Query Frame = -2 Query: 166 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKTAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 570 G+ A +KLK +R+ +W D YK+ L + K P G+ A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+ AF P DG + +I+E+DEV+I G G G ++GDIPGVR+KV KV+ V+L + K EKP Sbjct: 3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139 The following BLAST results are available for this feature:
BLAST of DC887584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887584 ID=DC887584; Name=DC887584; organism=Citrus sinensis; type=EST; length=673bpback to top |