DC887573

Overview
NameDC887573
Unique NameDC887573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_HUMAN (60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.368e-57
Identity = 113/172 (65.70%), Postives = 136/172 (79.07%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGT+TDD+RV EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKG
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.333e-57
Identity = 108/172 (62.79%), Postives = 140/172 (81.40%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I     ++ +RT PKS D+YL+LLVKLYRFL RRT+S F+K+ILKRLFMSK+N+PPM++S++ +FMK   +E ++AV+VGT+ DD R++ +P L V ALR T+ AR+RI KAGGE +TFDQLALRAP G+NTVL++G +  REA KHFGPAPGVPHSHTK +VRSKG
Sbjct:    1 MGVD-ICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.047e-57
Identity = 111/172 (64.53%), Postives = 139/172 (80.81%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT P+S DIYL+LLVK+YRFL RRT+S F ++ILKRLFMS++N PP+SL+R+ +FMK   +++ IAVVVGT+TDD R++E+P LKV ALR TE AR RI KAGGE +TF++LA  +P G  TVL++G +NAREAVKHFGPAPGVPHSHTKP VRSKG
Sbjct:    1 MGID-INHKYDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_BOVIN (60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 3.047e-57
Identity = 113/172 (65.70%), Postives = 135/172 (78.49%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E K AVVVGT+TDD+RV EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKG
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 5.197e-57
Identity = 109/172 (63.37%), Postives = 138/172 (80.23%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K  R  PKS DIYL+LLVKLYRFL RR+++ F++V+L+RLFMS+ N+PP+++SRL + MK  G+E+KIAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKG
Sbjct:    1 MGVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 5.197e-57
Identity = 109/172 (63.37%), Postives = 138/172 (80.23%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+D I   K +K  R  PKS DIYL+LLVKLYRFL RR+++ F++V+L+RLFMS+ N+PP+++SRL + MK  G+E+KIAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKG
Sbjct:    1 MGVD-IRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.865e-57
Identity = 112/172 (65.12%), Postives = 137/172 (79.65%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT  KS D+YL+LLVKLYR+L RRT+S F+ +IL+RLFMS++N+PP+SLSRL + MK   +E  IAVVVGT+T+D+R+Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G  TVLL+G +NAREAV+HFGPAPG P SHTKPYVR+KG
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18B_XENLA (60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-B PE=2 SV=4)

HSP 1 Score: 218.779 bits (556), Expect = 1.512e-56
Identity = 109/172 (63.37%), Postives = 137/172 (79.65%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S+F++V+LKRLFMS+ N+PP+S+SRL + MK  G+E+K AVVVG +TDD+R++++P LKV AL+ T   R+RI K+GG+ +TFDQLAL AP GQNTVLL GP+ ARE  +HFG APG PHS TKPYV SKG
Sbjct:    1 MGID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.579e-56
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT  KS D+YL+LLVKLYR+L RRT++ F++++L+RLFMS++N+PP+SLSRL + MK   +E  IAVVVGT+T+D R+Y+VP + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVRSKG
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 5.746e-56
Identity = 109/172 (63.37%), Postives = 139/172 (80.81%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT  KS DIYL+LLVKLYR+L RRT++ F++++L+RLFMS++N+PP+S+SRL + MK   +E  IAVVVGTVT+D+R+Y++P + V AL  TE ARARI  AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P SHTKPYVR+KG
Sbjct:    1 MGID-INHKHDRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 171          
The following BLAST results are available for this feature:
BLAST of DC887573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_HUMAN1.368e-5765.7060S ribosomal protein L18 OS=Homo sapiens GN=RPL18... [more]
RL18_DIACI2.333e-5762.7960S ribosomal protein L18 OS=Diaphorina citri GN=R... [more]
RL18_LYSTE3.047e-5764.5360S ribosomal protein L18 OS=Lysiphlebus testaceip... [more]
RL18_BOVIN3.047e-5765.7060S ribosomal protein L18 OS=Bos taurus GN=RPL18 P... [more]
RL18_ORENI5.197e-5763.3760S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO5.197e-5763.3760S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18_SPOFR8.865e-5765.1260S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18B_XENLA1.512e-5663.3760S ribosomal protein L18-B OS=Xenopus laevis GN=r... [more]
RL18_PLUXY2.579e-5663.9560S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_BOMMO5.746e-5663.3760S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]

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Properties
Property NameValue
Genbank descriptionDC887573 EIC Citrus sinensis cDNA clone EIC0577 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887573 ID=DC887573; Name=DC887573; organism=Citrus sinensis; type=EST; length=569bp
TTCCCTTAGATCGCACATAGGGTTTGGTGTGGCTGTGTGGTACACCAGGA
GCAGGTCCAAAGTGCTTGACAGCCTCACGAGCATTCTTCGGACCTCTCAG
GAGAACCGTGTTCTGACCCAAAGGAGCACGAAGAGCCAGTTGGTCAAATG
TCAAGCATTCTCCCCCTGCCTTCTCAATTCTCGCCCTTGCTGTCTCTGTG
AACCTCAGTGCAGTAACCTTGAGTGCAGGAACTTCATACACACGAATATC
ATCAGTGACTGTTCCAACAACCACAGCAATCTTGTCCTCCTTGCCCTTCA
TGAATTTAGTCAAACGAGAGAGAGACATAGGAGGCTTGTTGACTTTGCTC
ATGAAGAGCCTCTTCAATATCACCTTATCGAAATTGCTATCAGTCCTCCT
CACGAGAAATCGGTACAGCTTGACGAGAAGCTTGAGATAGATATCGTTCG
ATTTCGGGGCAGTCCTCTTGGACTTCTTGCTCTTACCACCGGCTATCAAA
TCGATACCCATTGTTGTTGTTGCTGCTGCTGCTCCCTGCGACTGCTTCCC
TAAACAGCAAATGCTATTC
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