DC887573

Overview
NameDC887573
Unique NameDC887573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.724e-55
Identity = 110/172 (63.95%), Postives = 133/172 (77.33%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT PKS D+YL+LLVKLYRFL RRT+  F+++ILKRLFMSK+N+PP+SL R+ +F K   + +   VVVGTVTDD R+  VP L V AL  T+TAR RI KAGGE LTFDQLALR+P G+NT+LL+G + AR A KHFG APGVPHSHT+PYVRSKG
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18A_XENLA (60S ribosomal protein L18-A OS=Xenopus laevis GN=rpl18-A PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.848e-54
Identity = 107/172 (62.21%), Postives = 134/172 (77.91%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S+F++V+LKRLFMS+ N+PP+S+SRL + MK   +E+K AVVVG +T D+R++++P L V AL+ T  AR+RI KAGG+ +TFDQLAL AP GQNTVLL GP+ ARE  +HFG AP  PHS TKPYV SKG
Sbjct:    1 MGID-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_TAEAS (60S ribosomal protein L18 OS=Taenia asiatica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.414e-54
Identity = 109/171 (63.74%), Postives = 135/171 (78.95%), Query Frame = -2
Query:    5 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSK 511
            MGID+    K K  +R  PKS D+YL+L+VKLY+FL RRT S F+ ++ +RLFMS++N+ P+SLSRLT+ MK  G+E KIAVV+GTVT+DIR+ EVP L V ALR T  AR RI KAGG+ +T DQLAL+APLG+ TVLL+GP+ AREA +HFGPAPGVP SHTKPYV SK
Sbjct:    1 MGIDISHRNKRKVVRRN-PKSGDVYLRLMVKLYKFLARRTHSKFNNIVKRRLFMSRINRAPLSLSRLTRQMKKPGREGKIAVVIGTVTNDIRMREVPKLTVCALRVTAGARTRILKAGGKVMTVDQLALKAPLGKGTVLLQGPRKAREACRHFGPAPGVPGSHTKPYVISK 170          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 4.118e-54
Identity = 103/161 (63.98%), Postives = 128/161 (79.50%), Query Frame = -2
Query:    2 KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG--KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 478
            +K +RT PKS D+YL+LLVKLYRFL RRT+  F+++ILKRLFMSK+N+PP+SL R+ +F K   + +   VVVGTVTDD R+  VP L + AL  T+TAR RI KAGGE LTFDQLAL++P G+NT+LL+G + AR A KHFG APGVPHSHT+PYVRSKG
Sbjct:   12 RKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLLQGKRTARTACKHFGKAPGVPHSHTRPYVRSKG 172          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 2.498e-51
Identity = 104/173 (60.12%), Postives = 133/173 (76.88%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDK-IAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT PKS D+YL LLVKLYRFL RRT   F+K++++RLFMS+ N PPMSL+R+   MK  GK++K +AVV+GTVT+D+R+ +VP L V ALR T+ AR RI K GG+  TFDQLAL +P G+NTVL++G + ARE  KHFG APGVPHS+T+PYV+SKG
Sbjct:    1 MGID-INHKWDRKVRRTRPKSLDVYLSLLVKLYRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLMQGKRTAREVFKHFGRAPGVPHSNTRPYVQSKG 172          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_CAEBR (60S ribosomal protein L18 OS=Caenorhabditis briggsae GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.269e-51
Identity = 102/172 (59.30%), Postives = 130/172 (75.58%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I+    + ++RTAPKS + YL+LL KLY FL RRT   F+ ++LKRL MS+ N+ P+SL+++ + +K  G E K  V + TVTDD R+YEVP + + AL  TE ARARI  AGGE +T DQLALR+P G+NTV L+GP++AREA KHFGPAPGVPHSHTKP+VRSKG
Sbjct:    1 MGID-ISHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKVARVVKQAGNEKKTVVTLSTVTDDARLYEVPKISLAALHVTEGARARILAAGGEIITLDQLALRSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPHVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_CAEEL (60S ribosomal protein L18 OS=Caenorhabditis elegans GN=rpl-18 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.115e-50
Identity = 102/172 (59.30%), Postives = 129/172 (75.00%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     + ++RTAPKS + YL+LL KLY FL RRT   F+ ++LKRL MS+ N+ P+SL++L + ++  G E+K  V + TVTDD R+Y VP + V AL  TE ARARI  AGGE +T DQLAL++P G+NTV L+GP++AREA KHFGPAPGVPHSHTKPYVRSKG
Sbjct:    1 MGID-INHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEKHFGPAPGVPHSHTKPYVRSKG 171          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.115e-50
Identity = 109/173 (63.01%), Postives = 131/173 (75.72%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GK-EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +K +RT PKS D+YL+LLVKLYRFL RRT   F+K+IL+RLFMS+ N+PP+SLSR+ K MK  GK E+ IAVVVGTVT+D R    P + V ALR TE AR RI K GG+  TFDQLAL AP G+NTVL++G + AREA  HFG APGVPHS+T+PYV+SKG
Sbjct:    1 MGID-INHKWDRKVRRTKPKSLDVYLRLLVKLYRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLMQGERTAREAFTHFGRAPGVPHSNTRPYVQSKG 172          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.607e-50
Identity = 100/172 (58.14%), Postives = 128/172 (74.42%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID  +    +   RTAPKS+++YLKLLVKLY FL RRTD+ F+KV+LK LF+SK+N+PP+S+SR+ + +K  G  +K  VVVGTVTDD R++E P   V ALRFT  ARA+I KAGGEC+T DQLA+RAP GQNT++LRGP+N+REAV+HFG     PH    P + S G
Sbjct:    1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTG 169          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.711e-50
Identity = 108/174 (62.07%), Postives = 126/174 (72.41%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGK----EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     +KS+R+ P S ++YLKLLVKLYRFL RRTDS F+K ILKRLF SK N+PP+S+S++      K    E K  V+VGTVTDD R+  VP L V ALRFT++ARARI KAGGE LT DQLALRAP G NTVLLRG K+AREA +HFG     PH H  PYVRS+G
Sbjct:    1 MGID-IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEG 170          
The following BLAST results are available for this feature:
BLAST of DC887573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_DROME3.724e-5563.9560S ribosomal protein L18 OS=Drosophila melanogast... [more]
RL18A_XENLA1.848e-5462.2160S ribosomal protein L18-A OS=Xenopus laevis GN=r... [more]
RL18_TAEAS2.414e-5463.7460S ribosomal protein L18 OS=Taenia asiatica GN=RP... [more]
RL18_DROPS4.118e-5463.9860S ribosomal protein L18 OS=Drosophila pseudoobsc... [more]
RL18_ANOGA2.498e-5160.1260S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18_CAEBR7.269e-5159.3060S ribosomal protein L18 OS=Caenorhabditis briggs... [more]
RL18_CAEEL2.115e-5059.3060S ribosomal protein L18 OS=Caenorhabditis elegan... [more]
RL18_AEDAE2.115e-5063.0160S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18_YEAST3.607e-5058.1460S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18B_SCHPO4.711e-5062.0760S ribosomal protein L18-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionDC887573 EIC Citrus sinensis cDNA clone EIC0577 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887573 ID=DC887573; Name=DC887573; organism=Citrus sinensis; type=EST; length=569bp
TTCCCTTAGATCGCACATAGGGTTTGGTGTGGCTGTGTGGTACACCAGGA
GCAGGTCCAAAGTGCTTGACAGCCTCACGAGCATTCTTCGGACCTCTCAG
GAGAACCGTGTTCTGACCCAAAGGAGCACGAAGAGCCAGTTGGTCAAATG
TCAAGCATTCTCCCCCTGCCTTCTCAATTCTCGCCCTTGCTGTCTCTGTG
AACCTCAGTGCAGTAACCTTGAGTGCAGGAACTTCATACACACGAATATC
ATCAGTGACTGTTCCAACAACCACAGCAATCTTGTCCTCCTTGCCCTTCA
TGAATTTAGTCAAACGAGAGAGAGACATAGGAGGCTTGTTGACTTTGCTC
ATGAAGAGCCTCTTCAATATCACCTTATCGAAATTGCTATCAGTCCTCCT
CACGAGAAATCGGTACAGCTTGACGAGAAGCTTGAGATAGATATCGTTCG
ATTTCGGGGCAGTCCTCTTGGACTTCTTGCTCTTACCACCGGCTATCAAA
TCGATACCCATTGTTGTTGTTGCTGCTGCTGCTCCCTGCGACTGCTTCCC
TAAACAGCAAATGCTATTC
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