DC887573
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 6.153e-50 Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = -2 Query: 2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGK----EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511 MGID I KKS+R+ P S ++YLKLLVKLYRFL RRTDS F+K ILKRLF SK N+PP+S+S++ K ++K VVVGTVTDD R+ VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG PH H PYVRS+G Sbjct: 1 MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEG 170
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.568e-45 Identity = 97/178 (54.49%), Postives = 128/178 (71.91%), Query Frame = -2 Query: 2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFM--------KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511 MG+DL K K+ R S + Y+KLL+KLY+FL +RT+S F+K+I KRL S+ N+ P+SLSR+ M KGK+ IAV+VG V DD+R+ +PAL++ ALRF+++AR RI AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G Sbjct: 1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRG 177
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 4.563e-45 Identity = 94/160 (58.75%), Postives = 115/160 (71.88%), Query Frame = -2 Query: 2 KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG-KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 478 +K+ R S + Y LLVKLYRFL RRT+S F+KV+LKRL +K N+PP+S+SR+ MK K KIAV VGTV DD R+ + P L V ALRFTETAR+RI KAGG+ L+FDQ AL P G NT L++G ARE KHFG APG+P SH +PYVRS+G Sbjct: 11 RKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEG 170
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 5.045e-44 Identity = 94/178 (52.81%), Postives = 126/178 (70.79%), Query Frame = -2 Query: 2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511 MG+DL K K+ R S + Y+KLL+KLY+FL +RT+S F+K++ +RL S+ N+ P+SLSR+ MK GK+ IAV+VG V DD+R+ +PAL+V ALRF+++AR RI AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+ ++G Sbjct: 1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRG 177
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.917e-43 Identity = 100/171 (58.48%), Postives = 118/171 (69.01%), Query Frame = -2 Query: 2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKG 511 MGIDL+ G+ KK R A S + YL+LLVKLY+FL RRTD +F+KV+LKRL M + K P+SLS+L+K M+ + D AVVVGTVT+D R+ VP L V ALR TETAR RI +GGE LTFDQL R+P G LLRG AREAVKHF G P KPYVRSKG Sbjct: 1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKG 167
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 7.286e-43 Identity = 92/178 (51.69%), Postives = 122/178 (68.54%), Query Frame = -2 Query: 2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511 MG+DL K + R S + Y+KLL+KLY+FL +RT S F+KV+ +RL S+ N+ P+SLSR+ MK K IAVVVG V DD+R+ +PA++V ALRF+++AR I AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY ++G Sbjct: 1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRG 177
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 2.769e-42 Identity = 96/171 (56.14%), Postives = 117/171 (68.42%), Query Frame = -2 Query: 2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKG 511 MGIDL+ G+ KK R A S + YL+LLVKL++FL RRTD F+K++LKRL M + K P+SLS+L+K M+ + + AVV+GTVT D R+ VP L V ALR TETAR RI +GGE LTFDQL R+P+G LLRG AREAVKHF G P KPYVRSKG Sbjct: 1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKG 167
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32 Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = -2 Query: 8 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRR-TDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 511 MGI +I K + + P S DI LLVK+YR + + + F+KV+L+RLFMS+ ++PPMS+SR+ + MK G+E++ AVVVGTVTDD+R++E+P LKV+AL+ T R RI K + + F LAL AP Q +VLL P+NAR+ +HF AP +P HTKPYV S Sbjct: 1 MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 1.334e-28 Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = -2 Query: 203 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALR 511 MG+D I K +K +R PKS DIYL+LLVKL RFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK G+E K AVVVGT+TDD+R EVP LKV ALR Sbjct: 1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104 The following BLAST results are available for this feature:
BLAST of DC887573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DC887573 ID=DC887573; Name=DC887573; organism=Citrus sinensis; type=EST; length=569bpback to top |