DC887573

Overview
NameDC887573
Unique NameDC887573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.153e-50
Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGK----EDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MGID I     KKS+R+ P S ++YLKLLVKLYRFL RRTDS F+K ILKRLF SK N+PP+S+S++      K    ++K  VVVGTVTDD R+  VP L + ALRFT++ARARI KAGGE LT DQLALRAP G NTVL+RG K+AREA +HFG     PH H  PYVRS+G
Sbjct:    1 MGID-IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEG 170          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_TRYBB (60S ribosomal protein L18 OS=Trypanosoma brucei brucei GN=RPL18-A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.568e-45
Identity = 97/178 (54.49%), Postives = 128/178 (71.91%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFM--------KGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S F+K+I KRL  S+ N+ P+SLSR+   M        KGK+  IAV+VG V DD+R+  +PAL++ ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT+LLRG K+ RE+VKHFG A GVP SH KP+V S+G
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRG 177          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.563e-45
Identity = 94/160 (58.75%), Postives = 115/160 (71.88%), Query Frame = -2
Query:    2 KKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKG-KEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 478
            +K+ R    S + Y  LLVKLYRFL RRT+S F+KV+LKRL  +K N+PP+S+SR+   MK  K  KIAV VGTV DD R+ + P L V ALRFTETAR+RI KAGG+ L+FDQ AL  P G NT L++G   ARE  KHFG APG+P SH +PYVRS+G
Sbjct:   11 RKTGRKTLVSQNPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEG 170          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_TRYCR (60S ribosomal protein L18 OS=Trypanosoma cruzi GN=RPL18 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.045e-44
Identity = 94/178 (52.81%), Postives = 126/178 (70.79%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+DL    K K+  R    S + Y+KLL+KLY+FL +RT+S F+K++ +RL  S+ N+ P+SLSR+   MK        GK+  IAV+VG V DD+R+  +PAL+V ALRF+++AR RI  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+VKHFG A GVP SH KP+  ++G
Sbjct:    1 MGVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLAQRTNSAFNKLVHQRLLKSRSNRAPISLSRIAVCMKRKSVWLEKGKKAPIAVIVGDVLDDVRMARIPALRVCALRFSKSARERITGAGGECLTFDQLAMVAPTGKNTFLLRGRKSGRESVKHFG-AAGVPGSHAKPFTSNRG 177          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_THEPA (60S ribosomal protein L18 OS=Theileria parva GN=RPL18 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.917e-43
Identity = 100/171 (58.48%), Postives = 118/171 (69.01%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKG 511
            MGIDL+  G+ KK  R A  S + YL+LLVKLY+FL RRTD +F+KV+LKRL M +  K P+SLS+L+K M+ + D  AVVVGTVT+D R+  VP L V ALR TETAR RI  +GGE LTFDQL  R+P G    LLRG   AREAVKHF     G P    KPYVRSKG
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLYKFLSRRTDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEKRPDNTAVVVGTVTNDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHFRNEVKGNP----KPYVRSKG 167          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_LEIMA (60S ribosomal protein L18 OS=Leishmania major GN=RPL18-A PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.286e-43
Identity = 92/178 (51.69%), Postives = 122/178 (68.54%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--------GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 511
            MG+DL    K  +  R    S + Y+KLL+KLY+FL +RT S F+KV+ +RL  S+ N+ P+SLSR+   MK         K   IAVVVG V DD+R+  +PA++V ALRF+++AR  I  AGGECLTFDQLA+ AP G+NT LLRG K+ RE+V+HFG A GVP SH+KPY  ++G
Sbjct:    1 MGVDLTGISKKSRVIRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHFG-ASGVPGSHSKPYATNRG 177          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_THEAN (60S ribosomal protein L18 OS=Theileria annulata GN=RPL18 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.769e-42
Identity = 96/171 (56.14%), Postives = 117/171 (68.42%), Query Frame = -2
Query:    2 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHF-GPAPGVPHSHTKPYVRSKG 511
            MGIDL+  G+ KK  R A  S + YL+LLVKL++FL RRTD  F+K++LKRL M +  K P+SLS+L+K M+ + +  AVV+GTVT D R+  VP L V ALR TETAR RI  +GGE LTFDQL  R+P+G    LLRG   AREAVKHF     G P    KPYVRSKG
Sbjct:    1 MGIDLVKAGRVKKPGRKALVSKNPYLRLLVKLFKFLARRTDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHMESRPNNTAVVIGTVTSDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKAREAVKHFRNEVKGNP----KPYVRSKG 167          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_SALSA (60S ribosomal protein L18 OS=Salmo salar GN=rpl18 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = -2
Query:    8 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRR-TDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 511
            MGI +I   K +  +   P S DI   LLVK+YR    + + + F+KV+L+RLFMS+ ++PPMS+SR+ + MK  G+E++ AVVVGTVTDD+R++E+P LKV+AL+ T   R RI K   + + F  LAL AP  Q +VLL  P+NAR+  +HF  AP +P  HTKPYV S
Sbjct:    1 MGI-VIQHNKDRLVRPKQPLSEDI--TLLVKIYRLPGSKCSTAPFNKVVLRRLFMSRTHRPPMSVSRMIRKMKLPGRENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165          
BLAST of DC887573 vs. ExPASy Swiss-Prot
Match: RL18_PIG (60S ribosomal protein L18 (Fragment) OS=Sus scrofa GN=RPL18 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.334e-28
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = -2
Query:  203 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALR 511
            MG+D I   K +K +R  PKS DIYL+LLVKL RFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E K AVVVGT+TDD+R  EVP LKV ALR
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104          
The following BLAST results are available for this feature:
BLAST of DC887573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18A_SCHPO6.153e-5061.4960S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_TRYBB1.568e-4554.4960S ribosomal protein L18 OS=Trypanosoma brucei br... [more]
RL18_DICDI4.563e-4558.7560S ribosomal protein L18 OS=Dictyostelium discoid... [more]
RL18_TRYCR5.045e-4452.8160S ribosomal protein L18 OS=Trypanosoma cruzi GN=... [more]
RL18_THEPA1.917e-4358.4860S ribosomal protein L18 OS=Theileria parva GN=RP... [more]
RL18_LEIMA7.286e-4351.6960S ribosomal protein L18 OS=Leishmania major GN=R... [more]
RL18_THEAN2.769e-4256.1460S ribosomal protein L18 OS=Theileria annulata GN... [more]
RL18_SALSA7.557e-3248.5460S ribosomal protein L18 OS=Salmo salar GN=rpl18 ... [more]
RL18_PIG1.334e-2862.8660S ribosomal protein L18 (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionDC887573 EIC Citrus sinensis cDNA clone EIC0577 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887573 ID=DC887573; Name=DC887573; organism=Citrus sinensis; type=EST; length=569bp
TTCCCTTAGATCGCACATAGGGTTTGGTGTGGCTGTGTGGTACACCAGGA
GCAGGTCCAAAGTGCTTGACAGCCTCACGAGCATTCTTCGGACCTCTCAG
GAGAACCGTGTTCTGACCCAAAGGAGCACGAAGAGCCAGTTGGTCAAATG
TCAAGCATTCTCCCCCTGCCTTCTCAATTCTCGCCCTTGCTGTCTCTGTG
AACCTCAGTGCAGTAACCTTGAGTGCAGGAACTTCATACACACGAATATC
ATCAGTGACTGTTCCAACAACCACAGCAATCTTGTCCTCCTTGCCCTTCA
TGAATTTAGTCAAACGAGAGAGAGACATAGGAGGCTTGTTGACTTTGCTC
ATGAAGAGCCTCTTCAATATCACCTTATCGAAATTGCTATCAGTCCTCCT
CACGAGAAATCGGTACAGCTTGACGAGAAGCTTGAGATAGATATCGTTCG
ATTTCGGGGCAGTCCTCTTGGACTTCTTGCTCTTACCACCGGCTATCAAA
TCGATACCCATTGTTGTTGTTGCTGCTGCTGCTCCCTGCGACTGCTTCCC
TAAACAGCAAATGCTATTC
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