DC887561

Overview
NameDC887561
Unique NameDC887561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = -1
Query:  233 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 499
            +W  +VLAYEPVWAIGTG+ A+P QAQE+H  +R+ ++    AE+A    I+YGGSV   N KE+ ++PDVDG L+GGA+LK  +F+ I+
Sbjct:  158 SWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAKEIFSKPDVDGGLIGGAALKADDFLAIV 247          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ESCF3 (Triosephosphate isomerase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ECOUT (Triosephosphate isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSM (Triosephosphate isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSE (Triosephosphate isomerase OS=Escherichia coli (strain SE11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLU (Triosephosphate isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLI (Triosephosphate isomerase OS=Escherichia coli (strain K12) GN=tpiA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLC (Triosephosphate isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL6 (Triosephosphate isomerase OS=Escherichia coli O6 GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
The following BLAST results are available for this feature:
BLAST of DC887561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SALA43.913e-2155.56Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_FLAJ13.913e-2152.22Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_ESCF33.913e-2157.29Triosephosphate isomerase OS=Escherichia fergusoni... [more]
TPIS_ECOUT3.913e-2157.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSM3.913e-2157.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSE3.913e-2157.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLU3.913e-2157.29Triosephosphate isomerase OS=Escherichia coli O17:... [more]
TPIS_ECOLI3.913e-2157.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLC3.913e-2157.29Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOL63.913e-2157.29Triosephosphate isomerase OS=Escherichia coli O6 G... [more]

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Properties
Property NameValue
Genbank descriptionDC887561 EIC Citrus sinensis cDNA clone EIC0558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887561 ID=DC887561; Name=DC887561; organism=Citrus sinensis; type=EST; length=529bp
CCAACTTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGTGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGATGAACTC
CGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTG
CTGCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATT
CTAGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCT
CAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGG
TACCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTG
GATATTTTTTCTGCGATTGCTTTTGTTTG
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