DC887561

Overview
NameDC887561
Unique NameDC887561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.480e-36
Identity = 73/101 (72.28%), Postives = 84/101 (83.17%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q  A A+KI +W NVV+AYEPVWAIGTG+ ATP QAQEVHA LR+WL DN+S EV+AS RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII +
Sbjct:  145 QMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINA 245          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.480e-36
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = -1
Query:  212 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 529
            Q KA A+ I++W NVV+AYEPVWAIGTGKVA+P QAQEVHA +R WLK NVSA+VA++ RIIYGGSVN ANC ELA + D+DGFLVGGASLK P+F  I  S T KK
Sbjct:  189 QMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKK 295          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.933e-36
Identity = 73/107 (68.22%), Postives = 87/107 (81.31%), Query Frame = -1
Query:  212 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 529
            Q KA A+ + +W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ + T KK
Sbjct:  205 QLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKK 311          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.525e-36
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = -1
Query:  212 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 529
            Q KA A+ + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  206 QLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.298e-36
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = -1
Query:  239 TKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 526
            T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:  146 TEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.346e-36
Identity = 69/101 (68.32%), Postives = 84/101 (83.17%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q  A+A++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  146 QLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.219e-35
Identity = 66/101 (65.35%), Postives = 87/101 (86.14%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q +A+++ IS+W +VV+AYEPVWAIGTGKVATP QA++VH  +R WL +NVS +VAASTRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:  141 QLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.061e-34
Identity = 74/96 (77.08%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 496
            WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRIIYGGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S T KK
Sbjct:  159 WDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKK 254          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.809e-34
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = -1
Query:  227 QTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q  A+AE++S   W+ VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL + +S E A + R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  145 QLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 2.363e-34
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = -1
Query:  233 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 529
            Q  AIA+K+ NW  +V+AYEPVWAIGTGK ATP QAQEVHAE+RKW  + + A VA   R+IYGGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:  146 QLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
The following BLAST results are available for this feature:
BLAST of DC887561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DROME1.480e-3672.28Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIC_SECCE1.480e-3670.09Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_FRAAN1.933e-3668.22Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_ARATH2.525e-3669.16Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIS_LATCH3.298e-3671.88Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_NEUCR7.346e-3668.32Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_GRAVE6.219e-3565.35Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP1.061e-3477.08Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_PARBA1.809e-3466.02Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_SCHPO2.363e-3466.67Triosephosphate isomerase OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionDC887561 EIC Citrus sinensis cDNA clone EIC0558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887561 ID=DC887561; Name=DC887561; organism=Citrus sinensis; type=EST; length=529bp
CCAACTTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGTGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGATGAACTC
CGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTG
CTGCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATT
CTAGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCT
CAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGG
TACCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTG
GATATTTTTTCTGCGATTGCTTTTGTTTG
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