DC887561

Overview
NameDC887561
Unique NameDC887561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.904e-29
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = -1
Query:  290 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 529
            QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:  127 QTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.904e-29
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  221 KAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAT 523
            K + E    W  VV+AYEPVW+IGTG VATP QA+EVH  LRKW  + V AE A   RIIYGGS NG+NC++L   P++DGFLVGGASLKPEF+ +I   T
Sbjct:  153 KELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFMTMIDILT 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.099e-29
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q  A+ E++ +W NVV+AYEPVWAIGTG  ATP  AQ++HA +RK+L   +  + A+  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  146 QLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 6.660e-29
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q +A+ EK+ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R++L + +S +VA S RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  146 QLQAVLEKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.938e-28
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q   + EK+ +W NVV+AYEPVWAIGTG  AT   AQ++HA +R +L +  S +VA + RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  146 QLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.638e-28
Identity = 61/101 (60.40%), Postives = 72/101 (71.29%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q   +  KI +W NVV+AYEPVWAIGTG  AT   AQ++H E+R +LKD + A+ A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  146 QLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.363e-28
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSATVKK 496
            W  +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+ + VS +VA  T I+YGGSVN  NC  L+ Q D+DGFLVGGASL   +FI IIKSA  KK
Sbjct:  161 WSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSAVPKK 256          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.640e-27
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q  A+  ++ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R +L + +  + A  TRI+YGGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  146 QLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.640e-27
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = -1
Query:  290 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 529
            QTKAIA ++ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+ + RI YGGSV  ANC+ELA +PD
Sbjct:  127 QTKAIAAQVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSNAIRIQYGGSVTAANCRELAGKPD 206          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.141e-27
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = -1
Query:  227 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 529
            Q +A+ +K+ +W NVV+AYEPVWAIGTG  AT   AQ +H  +R++L   +S + A   RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  146 QLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
The following BLAST results are available for this feature:
BLAST of DC887561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CULPI3.904e-2972.50Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPI1_GIALA3.904e-2960.40Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_YEAST5.099e-2957.43Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_KLULA6.660e-2958.42Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_ASHGO1.938e-2857.43Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_YARLI5.638e-2860.40Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_DICDI7.363e-2861.46Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_CANGA1.640e-2755.45Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_ANOME1.640e-2770.00Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_KLUMA8.141e-2755.45Triosephosphate isomerase OS=Kluyveromyces marxian... [more]

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Properties
Property NameValue
Genbank descriptionDC887561 EIC Citrus sinensis cDNA clone EIC0558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887561 ID=DC887561; Name=DC887561; organism=Citrus sinensis; type=EST; length=529bp
CCAACTTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGTGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGATGAACTC
CGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTG
CTGCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATT
CTAGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCT
CAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGG
TACCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTG
GATATTTTTTCTGCGATTGCTTTTGTTTG
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