DC887561

Overview
NameDC887561
Unique NameDC887561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.885e-22
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = -1
Query:  212 SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 502
            S ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A+VA    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  157 SAFEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.030e-21
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  224 QTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 529
            Q K   E +++  ++V+AYEPVWAIGTGK A+  QAQEVHA +R  +    S   AA  RI YGGSV  +N +EL A PD+DG L+GGASL  E F+ I+K+A
Sbjct:  147 QVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGASLNAEDFVAIVKAA 249          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.030e-21
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = -1
Query:  254 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 499
            ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  158 DFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.030e-21
Identity = 48/82 (58.54%), Postives = 62/82 (75.61%), Query Frame = -1
Query:  254 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 499
            ++  +VLAYEPVWAIGTGK A+PAQAQE+HA +R  + +    E+A +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  158 DFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.345e-21
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = -1
Query:  212 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 487
            VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  162 VVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKKDATVAAQVIIQYGGSVNDKNAAELFAQPDIDGALVGGASLKADAFAAIVKAAAAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_AZOPC (Triosephosphate isomerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.345e-21
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = -1
Query:  227 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 487
            ++LAYEPVWAIGTG+ ATP Q QE+H  +R+ L DN    +A  T I+YGGS N  N KEL   PDVDG L+GGASLK + F+ II++
Sbjct:  163 IILAYEPVWAIGTGRTATPVQVQEMHIFIRQILIDNYGQAIANETSILYGGSCNAGNAKELFINPDVDGGLIGGASLKVDTFLSIIEA 250          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.757e-21
Identity = 55/87 (63.22%), Postives = 63/87 (72.41%), Query Frame = -1
Query:  254 AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 514
            AE+I+    VV+AYEPVWAIGTGKVA+ A AQEV   +R  L +    EVAA  R++YGGSVN  N  EL AQPDVDG LVGGASLK
Sbjct:  161 AEQIAK---VVIAYEPVWAIGTGKVASAADAQEVCGAIRAELAELAGPEVAAQVRVLYGGSVNAKNVGELVAQPDVDGALVGGASLK 244          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHELP (Triosephosphate isomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  224 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 496
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +   A
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSLCSIA 257          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = -1
Query:  224 SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 502
            S+   +V+AYEPVWAIGTGK ATPA AQEVHA LRK L+   +AE A   RI+YGGS+   N KEL A  D+DG L+GGA+LK  +F+ I+ +A
Sbjct:  156 SDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAK-NAEAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIVHAA 248          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.294e-21
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = -1
Query:  254 NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 499
            ++  ++LAYEPVWAIGTGK AT  QAQE+HA +R  + D    EVA +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:  158 DFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
The following BLAST results are available for this feature:
BLAST of DC887561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ENT387.885e-2257.43Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_PROA21.030e-2152.43Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_BACFR1.030e-2158.54Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN1.030e-2158.54Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_ERWT91.345e-2160.42Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_AZOPC1.345e-2156.82Triosephosphate isomerase OS=Azobacteroides pseudo... [more]
TPIS_NOCFA1.757e-2163.22Triosephosphate isomerase OS=Nocardia farcinica GN... [more]
TPIS_SHELP2.294e-2156.52Triosephosphate isomerase OS=Shewanella loihica (s... [more]
TPIS_JANMA2.294e-2157.45Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_BACV82.294e-2158.54Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887561 EIC Citrus sinensis cDNA clone EIC0558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887561 ID=DC887561; Name=DC887561; organism=Citrus sinensis; type=EST; length=529bp
CCAACTTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGTGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGATGAACTC
CGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTG
CTGCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATT
CTAGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCT
CAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGG
TACCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTG
GATATTTTTTCTGCGATTGCTTTTGTTTG
back to top