DC887561

Overview
NameDC887561
Unique NameDC887561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SODGM (Triosephosphate isomerase OS=Sodalis glossinidius (strain morsitans) GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.996e-21
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++N V+AYEP+WAIGTGK ATPAQAQ VH    K+++D+++   A +A    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FENTVIAYEPIWAIGTGKSATPAQAQAVH----KFIRDHIAKHDAAIAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAAEAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHEDO (Triosephosphate isomerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.996e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -1
Query:  236 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 496
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENVRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_ERWCT (Triosephosphate isomerase OS=Erwinia carotovora subsp. atroseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.996e-21
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++N V+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A VA    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FENTVVAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKQDAAVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAADAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHISS (Triosephosphate isomerase OS=Shigella sonnei (strain Ss046) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHIFL (Triosephosphate isomerase OS=Shigella flexneri GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHIF8 (Triosephosphate isomerase OS=Shigella flexneri serotype 5b (strain 8401) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHIDS (Triosephosphate isomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHIBS (Triosephosphate isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHIB3 (Triosephosphate isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -1
Query:  212 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSATVKK 496
            ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A   K
Sbjct:  159 FEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAK 253          
BLAST of DC887561 vs. ExPASy Swiss-Prot
Match: TPIS_SHESW (Triosephosphate isomerase OS=Shewanella sp. (strain W3-18-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.913e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -1
Query:  236 WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 496
            +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  167 FDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
The following BLAST results are available for this feature:
BLAST of DC887561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SODGM2.996e-2155.56Triosephosphate isomerase OS=Sodalis glossinidius ... [more]
TPIS_SHEDO2.996e-2157.95Triosephosphate isomerase OS=Shewanella denitrific... [more]
TPIS_ERWCT2.996e-2157.58Triosephosphate isomerase OS=Erwinia carotovora su... [more]
TPIS_SHISS3.913e-2157.29Triosephosphate isomerase OS=Shigella sonnei (stra... [more]
TPIS_SHIFL3.913e-2157.29Triosephosphate isomerase OS=Shigella flexneri GN=... [more]
TPIS_SHIF83.913e-2157.29Triosephosphate isomerase OS=Shigella flexneri ser... [more]
TPIS_SHIDS3.913e-2157.29Triosephosphate isomerase OS=Shigella dysenteriae ... [more]
TPIS_SHIBS3.913e-2157.29Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_SHIB33.913e-2157.29Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_SHESW3.913e-2157.95Triosephosphate isomerase OS=Shewanella sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionDC887561 EIC Citrus sinensis cDNA clone EIC0558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887561 ID=DC887561; Name=DC887561; organism=Citrus sinensis; type=EST; length=529bp
CCAACTTTATTAAATCCACAATGATAAGTTTCAAATCCCCACTGAAATAG
GAAAGTGATTCTTAAGAATTCTGAAGATTTAACTTATTATACTGGAAAGG
CGTTGGTAACACTTAACAGACCACAAAAATTACAACGCTAGTTTCCAGAA
CGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCGAGTAGCTTGGTCTT
TAACTTCAATTCTTCTTCACTGTGGCAGACTTGATAATATCGATGAACTC
CGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATCCACATCAGGTTGTG
CTGCCAATTCTTTGCAATTTGCTCCATTTACAGAACCTCCGTAGATGATT
CTAGTTGATGCTGCAACTTCAGCACTGACATTGTCTTTAAGCCATTTCCT
CAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGTTGCAACCTTCCCGG
TACCAATGGCCCAAACTGGCTCATAAGCCAACACAACATTGTCCCAGTTG
GATATTTTTTCTGCGATTGCTTTTGTTTG
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