DC887531

Overview
NameDC887531
Unique NameDC887531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT4_TOBAC (Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.110e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -3 
Query:  396 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQ 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  304 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336

HSP 2 Score: 20.7866 bits (42), Expect = 6.110e-11
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -2 
Query:  493 SKEITALAP 519
            SKEITALAP
Sbjct:  296 SKEITALAP 304
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT3_SOLLC (Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.110e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -3 
Query:  396 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQ 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  304 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336

HSP 2 Score: 20.7866 bits (42), Expect = 6.110e-11
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -2 
Query:  493 SKEITALAP 519
            SKEITALAP
Sbjct:  296 SKEITALAP 304
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT2_SOLLC (Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.110e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -3 
Query:  396 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQ 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  304 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336

HSP 2 Score: 20.7866 bits (42), Expect = 6.110e-11
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -2 
Query:  493 SKEITALAP 519
            SKEITALAP
Sbjct:  296 SKEITALAP 304
[Close]
BLAST of DC887531 vs. ExPASy Swiss-Prot
Match: ACT1_SOLLC (Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.110e-11
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = -3 
Query:  396 PSSXKIKVVAPPERKYSVWIGGSILASLSTFQQ 494
            PSS KIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  304 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336

HSP 2 Score: 20.7866 bits (42), Expect = 6.110e-11
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = -2 
Query:  493 SKEITALAP 519
            SKEITALAP
Sbjct:  296 SKEITALAP 304
The following BLAST results are available for this feature:
BLAST of DC887531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
ACT4_TOBAC6.110e-1196.97Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT3_SOLLC6.110e-1196.97Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT2_SOLLC6.110e-1196.97Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT1_SOLLC6.110e-1196.97Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionDC887531 EIC Citrus sinensis cDNA clone EIC0509 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887531 ID=DC887531; Name=DC887531; organism=Citrus sinensis; type=EST; length=520bp
TATTACTCATGAAAGGAATACAATTGTTTGGCACTAAATTATAATGAGCT
CTTGGAAGAAGAATTGGGAAAAGAATCTTTAATTCAACCCAAACCAAATC
AGTAACAATCCAATACTCTTCTACTAACAAATAATAATGTAAAGAATTGA
ATCCCCCCATATTCATTGTTCAGACATCAAAGGACGAAAACACGAAAAAG
AAACAAGAACGAAAAGGATGAGAAAAAAGGAGAAAAAAGAAACTTCGAAC
AACCGCTTGATTGGAAGAAGCCTTTCCTTAATACAAAATGTCTGGTATAT
GTTTCCTCATAGCATTTCTCTTTCCACGATTAGAAGCATTTTCTGTGGAC
AATTGATGGTCCAGACTCATCATATTCTGCCTTTGCGATCCACATCTGCT
GGAAGGTGCTGAGGGAAGCCAATATCGAGCCTCCTATCCAGACACTGTAC
TTCCTCTCTGGTGGTGCTACCACCTTGATCTTCNTGCTACTTGGGAGCCA
ATGCAGTGATCTCCTTGCTC
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