DC887517

Overview
NameDC887517
Unique NameDC887517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.598e-12
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTKRV + + EW  WNWR++GD+M+NGA+F  SG      YA+ASS+  K A+++  LT ++G
Sbjct:  367 EVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSMLTYSSG 430          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTKR++T  +EW  WNWR+E D++VNGAFF PSG G S   ++  S+  K A+++D +T +AG
Sbjct:  379 EVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTPSGEGASGD-SQTLSLPAKPASMVDAITASAG 441          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTK     ESEW  WNWR+EGD+M+NGA+F  SG   ++ +A+ASS+  + + L+  +T +AG
Sbjct:  328 EVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAG 391          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = -2
Query:  283 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVGLSTQYAKASSVEPKSAALIDRLTMNAG 474
            +VTK  +  ES+W  WNWR+EGD+++NGA+F  SG    + YA+ASS+  + ++L+  +T  AG
Sbjct:  336 EVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAG 399          
BLAST of DC887517 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = -2
Query:  265 QVTKRVETDESEWAGWNWRTEGDVMVNGAFFVPSGVG--LSTQYAKASSVEPKSAALIDRLTMNAGVFGGPR 474
            +VTK  +  E EW  WNWR+EGD+++NGAFF  SG G   S+ Y+KASS+  + ++ +  +T+ +G     R
Sbjct:  357 EVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCKR 428          
The following BLAST results are available for this feature:
BLAST of DC887517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PEL10_ARATH2.598e-1246.88Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH1.290e-1148.44Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL_ZINEL2.200e-1145.31Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL11_ARATH2.200e-1143.75Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH6.400e-1141.67Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionDC887517 EIC Citrus sinensis cDNA clone EIC0488 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887517 ID=DC887517; Name=DC887517; organism=Citrus sinensis; type=EST; length=478bp
TCCCCTATCTTGCTTTATAATTTTCTATAACAATAATAATTGTAATGATA
ATGGAGCATCATGGTTGGTGATAGTGTACAAAATCAAAATAATTAGAAGA
GACAAAAAGATTGAGGTTGAAGGAGAGGGTGGTGGGAGCCGCGACGCGCC
GCTCCCGAATACCATTCCAAAGAAGTCGCCATCACCGTTGTTGCGGTTGG
TGCCGCCGCTGCCGGACCCACCGCCGCTGAATCCGGGATAAGAGTTGCCC
TCCCCTTCATCATCCCTGGGCCCACCGAAGACGCCGGCGTTCATGGTCAG
CCGGTCGATGAGGGCGGCTGATTTGGGCTCAACACTCGAGGCCTTTGCGT
ACTGCGTGCTGAGCCCCACGCCTGACGGCACAAAGAATGCCCCATTTACC
ATTACGTCCCCCTCCGTCCTCCAATTCCAGCCCGCCCACTCACTCTCGTC
TGTCTCCACGCGCTTCGTCACCTGAATT
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