CN184709

Overview
NameCN184709
Unique NameCN184709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184709 vs. ExPASy Swiss-Prot
Match: NLT22_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 3 
Query:  108 CGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRV 374
            CG+V   + PC+ F++   + P   CCSG + L+   +TT  ++ AC C+  A   I GIK  + A +P +CG+      I+   DCS++
Sbjct:   35 CGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKKLSEEVKTTEQKREACKCIVAATKGISGIKNELVAEVPKKCGITTTLPPITADFDCSKI 124
The following BLAST results are available for this feature:
BLAST of CN184709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLT22_PARJU5.695e-1133.33Probable non-specific lipid-transfer protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184709 ID=CN184709; Name=CN184709; organism=Citrus sinensis; type=EST; length=421bp
GAGGCAAGCAAAAGCCTCCCTGAAGAATCCTCATGGCTGCTCTTAAGCTT
GTTTGTGCTTTGCTTTTGTGCATTCTGGTGACTGCCCCGGTGACTAATGC
CATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCT
TGAGAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGG
TCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAA
CTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTG
CCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGC
CCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTG
ACTTTCCAAGTATGATTGACT
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