DC887405

Overview
NameDC887405
Unique NameDC887405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP-KGQTINIGTKDDVSAVKKTGCCS 684
            VIM+ GNK+DL+HLRAVS ED Q+ AEKE   F+ETSALE++N+E AF  +LT+IY ++S+KAL   +  + LP +G TIN+    D SA ++  CCS
Sbjct:  119 VIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVA---DASANQRRSCCS 213          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQ-TINIGTKDDVSAVKKTGCCS 684
            VIMLVGNK+DL+HLR V TE AQ+F E+E   F+ETSALES NVE AF ++LT+IY +VS+K LD  D+   + +G+  I I    D    KK GCCS
Sbjct:  119 VIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-----PAALPKGQTINIGTKDDVSAVKKTGCCS 684
            VIML+GNK+DL  LR V TEDA+ FAE+EN FFMETSALES NVENAF  VLT+IYR+VS+K L   ++      ++L KG  I +  ++     K + C S
Sbjct:  125 VIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTKASCCMS 226          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = -2
Query:  391 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALP-KGQTINIGTKDDVSAVKKTGCCSA 684
            VIM+ GNK+DL HLR+V+ ED QS AEKE   F+ETSALE+ NVE AF  +L +IY ++S+KAL   +  A   A+P +G TIN+   DD S   K  CCS+
Sbjct:  119 VIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINV---DDTSGGAKRACCSS 217          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA--ALP-KGQTINIGTKDDVSAVKKTGCCS 684
            VI+L GNK+DL+HLRAVS +D Q+  +KE   F+ETSALE+LNV+ AF  +LT IY ++S+KAL   +  A  ALP +G TIN+    D SA  K GCCS
Sbjct:  119 VIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINV---SDNSANVKRGCCS 215          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = -2
Query:  391 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAA---LP-KGQTINIGTKDDVSAVKKTGCCSA 684
            VIM+VGNK+DL HLRAVS ++ ++ AEKE  FF+ETSA+E++NVE AF  ++T++Y +V+RKAL   +  AA   LP +G+TI+I   D  +   K  CCSA
Sbjct:  119 VIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISI---DSAAGNTKRACCSA 217          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  394 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP---KGQTINIGTKDDVSAVKKTGCCS 684
            VIM+ GNK+DL HLRAVS +D  + +EKE   F+ETSALE+ N+E AF  +LT+IY +VS+KAL   +  A      +G TIN+    D S   K GCCS
Sbjct:  119 VIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVA---DTSGNTKKGCCS 215          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVK--KTGCC 684
            VIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +         P    ++I         K  K  CC
Sbjct:  118 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGNNVVDISVPPTTDGQKSNKLQCC 215          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVK--KTGCC 684
            VIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +         P    ++I         K  K  CC
Sbjct:  118 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVK--KTGCC 684
            VIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +         P    ++I         K  K  CC
Sbjct:  118 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215          
The following BLAST results are available for this feature:
BLAST of DC887405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RB2BV_BETVU2.965e-2153.06Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
YPTC6_CHLRE3.873e-2155.10Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RGP1_ORYSJ9.540e-2052.94Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RAA2C_ARATH2.125e-1951.96Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11A_TOBAC2.776e-1954.00Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ3.625e-1950.98Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB11C_LOTJA1.378e-1850.00Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11B_DISOM2.350e-1850.00Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_RAT6.836e-1850.00Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_HUMAN6.836e-1850.00Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887405 EIC Citrus sinensis cDNA clone EIC0327 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887405 ID=DC887405; Name=DC887405; organism=Citrus sinensis; type=EST; length=685bp
CGTTTAGGAACAGAATTATCTTAACATACTTCCCAAATTCCAGTCCTCAG
AAACCAAATATAAACTATCCTAGAGCTTAGGAGCTGATAACATACTACAA
TATTTTTTGGAGACAAACAGAGACAATACAATAAGAGAAAAACAGTAGGC
TCTTGCACAAACATGAGATCTCAGATCCAAATGATTATGGCTTTAACCTA
ACTCAAGCAAGATTTTGAGATTACCGGTACATGATGAAATGTAAAACTAT
AATTTCTTCCCGCACTCCATGTTGTCTCGTCCTGGCAAGCAGATCAAAGC
CAAGATGTCTCCAAGCCATGGAAATGTAAGTTCTAGAAAGAGGAGAAACT
ATTTTTTAGCACCTGGATTTTCCTTCGAAGCTGCAGATTATGCAGAGCAG
CACCCAGTCTTTTTCACAGCCGATACATCATCTTTAGTACCAATATTAAT
AGTTTGACCCTTGGGCAAGGCTGCTGGGTCATCACCTACATCAAGAGCCT
TCCTGCTAACAACTCGATATATCTGAGTGAGCACTTCGGTGAAGGCATTT
TCAACATTCAACGACTCTAGGGCAGAGGTTTCCATGAAGAAAGTGTTCTC
TTTCTCAGCGAACGACTGAGCATCCTCAGTTGAAACAGCACGCAAGTGAC
GCAAATCAGCCTTGTTACCCACAAGCATTATCACA
back to top