DC887405

Overview
NameDC887405
Unique NameDC887405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  397 IMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 681
            IMLVGNK+DLRHLR VST++A+ F+EK    F+ETSAL+S NVE AF  +LTQIY ++SR +   G         +TI + T  +  A  K+GCC
Sbjct:  121 IMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTGPQTTIDSNTETIILPTTSEPPAA-KSGCC 214          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 684
            VIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  118 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKMQCC 213          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 684
            VIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+  NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:  118 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  391 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD-----DPAALPKGQTINIGTKDDVSAVKKTGCCSA 684
            VIML+GNK DL   RAV TEDA+ FA+KE  FF+ETSA+E+ N+E+AF  VLT+I+ +V++K L   D     +PA+L  G+ I +     V   KK  CCS+
Sbjct:  122 VIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASL-TGKKILVPGPGQVIPEKK-ACCSS 222          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  391 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD-----DPAALPKGQTINIGTKDDVSAVKKTGCCSA 684
            VIML GNK DL   RAV TEDA+ FA+KE  FF+ETSA+E+  +E+AF  VLT+I+ +V++K L   +     +PA+L  G+ I +     V   KK  CCS+
Sbjct:  122 VIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASL-TGKKILVPGPGQVIPGKK-ACCSS 222          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  397 LVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGD-------DPAALPKGQTINI-GTKDDVSAVKKTGCC 675
            L+GNK+DL HLRAV TE++++FA++    F ETSAL S NV+ AF E++  IY+ VS+  +D+GD       + A+ P G TI++  T ++        CC
Sbjct:  123 LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  391 MLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL--DVGDDPAALPKGQTINIGTKDDVSAVKKT---GCCSA 678
            MLVGNK DL ++RAVS E+ ++ AE+E  FF+ETSAL+S NV+ AF  V+  IY  VSRK L  D   D   + +   +    KDD SA K++    CCS+
Sbjct:  121 MLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRVSLV----KDDNSASKQSSGFSCCSS 217          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  394 MLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 678
            ML+GNK DL  +RAVS E+ +S AE E  FFMETSAL+S NV+ AF  V+ +IY  +SRK L+       L   +   +  K++    K   CCS
Sbjct:  121 MLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLV--KNENEGTKTFSCCS 213          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = -2
Query:  397 LVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA------ALPKGQTINI--GTKDDVSAVKKTGCC 675
            L+GNK+DL HLRAV T++A++FA +    F ETSAL S NV+ AF E++  I+++VS+  +D+             PKG TI++    K+D    K + CC
Sbjct:  123 LIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKED-KKKKSSNCC 222          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = -2
Query:  397 IMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG--------QTINIGTKDDVSAVKKTGCC 681
            IML+GNK DL H RAV+TE+ + FA++    F+ETSA  + NVE AF     +IY+ +     DV ++   +  G        QT+  G   +  A K + CC
Sbjct:  114 IMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPG---EGGAAKSSSCC 213          
The following BLAST results are available for this feature:
BLAST of DC887405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RB11A_DICDI8.929e-1850.53Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11A_CHICK8.929e-1848.96Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_BOVIN3.393e-1747.92Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RB11D_TOBAC1.684e-1648.54Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC7.075e-1546.60Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT31_YEAST2.058e-1441.58GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
ARA1_ARATH7.822e-1446.53Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
ARA4_ARATH1.743e-1344.21Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
YPT32_YEAST1.927e-1240.59GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
YPTC4_CHLRE2.782e-1136.89GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionDC887405 EIC Citrus sinensis cDNA clone EIC0327 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887405 ID=DC887405; Name=DC887405; organism=Citrus sinensis; type=EST; length=685bp
CGTTTAGGAACAGAATTATCTTAACATACTTCCCAAATTCCAGTCCTCAG
AAACCAAATATAAACTATCCTAGAGCTTAGGAGCTGATAACATACTACAA
TATTTTTTGGAGACAAACAGAGACAATACAATAAGAGAAAAACAGTAGGC
TCTTGCACAAACATGAGATCTCAGATCCAAATGATTATGGCTTTAACCTA
ACTCAAGCAAGATTTTGAGATTACCGGTACATGATGAAATGTAAAACTAT
AATTTCTTCCCGCACTCCATGTTGTCTCGTCCTGGCAAGCAGATCAAAGC
CAAGATGTCTCCAAGCCATGGAAATGTAAGTTCTAGAAAGAGGAGAAACT
ATTTTTTAGCACCTGGATTTTCCTTCGAAGCTGCAGATTATGCAGAGCAG
CACCCAGTCTTTTTCACAGCCGATACATCATCTTTAGTACCAATATTAAT
AGTTTGACCCTTGGGCAAGGCTGCTGGGTCATCACCTACATCAAGAGCCT
TCCTGCTAACAACTCGATATATCTGAGTGAGCACTTCGGTGAAGGCATTT
TCAACATTCAACGACTCTAGGGCAGAGGTTTCCATGAAGAAAGTGTTCTC
TTTCTCAGCGAACGACTGAGCATCCTCAGTTGAAACAGCACGCAAGTGAC
GCAAATCAGCCTTGTTACCCACAAGCATTATCACA
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