DC887405

Overview
NameDC887405
Unique NameDC887405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD--------------PAALPKGQTINIGTKDDVSAVKKTGCC 684
            +IM+VGNK+DL   R V T++AQ+FAE     F+ETSAL S NV  +F  +LT IY +VS K   V DD              P + P  Q             KK+GCC
Sbjct:  117 LIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQL--TANTTSTHQEKKSGCC 224          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  433 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRK--------ALDVGDDPAALPKGQTINIGTK 684
            V+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++        A+ +G  PA    GQ +  G K
Sbjct:  119 VVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNNARTNAVTLGSGPA----GQELGPGEK 206          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = -2
Query:  394 IMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 681
            IMLVGNK DL H RAVS E+ + FA++    FME SA  + NVE AF +    IY+ +     DV ++   +  G  +   +    S+ +  GCCS
Sbjct:  114 IMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYVVPGQSGGAGSSSQGGGCCS 209          
BLAST of DC887405 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = -2
Query:  397 VIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTK---DDVSAVKKTGCC 684
            V+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++  +        P+   I +G+     +    +K  CC
Sbjct:  119 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQN-------SPRSNAIALGSAQAGQEPGPGQKRACC 210          
The following BLAST results are available for this feature:
BLAST of DC887405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RB11C_DICDI2.782e-1140.00Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB25_BOVIN2.782e-1145.65Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB2A_MAIZE3.633e-1138.54Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB25_RABIT6.198e-1140.40Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]

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Properties
Property NameValue
Genbank descriptionDC887405 EIC Citrus sinensis cDNA clone EIC0327 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887405 ID=DC887405; Name=DC887405; organism=Citrus sinensis; type=EST; length=685bp
CGTTTAGGAACAGAATTATCTTAACATACTTCCCAAATTCCAGTCCTCAG
AAACCAAATATAAACTATCCTAGAGCTTAGGAGCTGATAACATACTACAA
TATTTTTTGGAGACAAACAGAGACAATACAATAAGAGAAAAACAGTAGGC
TCTTGCACAAACATGAGATCTCAGATCCAAATGATTATGGCTTTAACCTA
ACTCAAGCAAGATTTTGAGATTACCGGTACATGATGAAATGTAAAACTAT
AATTTCTTCCCGCACTCCATGTTGTCTCGTCCTGGCAAGCAGATCAAAGC
CAAGATGTCTCCAAGCCATGGAAATGTAAGTTCTAGAAAGAGGAGAAACT
ATTTTTTAGCACCTGGATTTTCCTTCGAAGCTGCAGATTATGCAGAGCAG
CACCCAGTCTTTTTCACAGCCGATACATCATCTTTAGTACCAATATTAAT
AGTTTGACCCTTGGGCAAGGCTGCTGGGTCATCACCTACATCAAGAGCCT
TCCTGCTAACAACTCGATATATCTGAGTGAGCACTTCGGTGAAGGCATTT
TCAACATTCAACGACTCTAGGGCAGAGGTTTCCATGAAGAAAGTGTTCTC
TTTCTCAGCGAACGACTGAGCATCCTCAGTTGAAACAGCACGCAAGTGAC
GCAAATCAGCCTTGTTACCCACAAGCATTATCACA
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