DC887352

Overview
NameDC887352
Unique NameDC887352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX1A_MOUSE (Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 37/111 (33.33%), Postives = 64/111 (57.66%), Query Frame = -2
Query:  343 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 675
            +TG+    E ++ ++E+G+        I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  AVD+V+   +  +KA K Q  +R+
Sbjct:  155 ITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 263          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX12_PONAB (Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  334 DQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 642
            +QL+     E+  Q   Q+         L  I+ER  A+R LE  +L++ QIF D+A+++  QGD++D+IE+ V S+  HV+     LQ+A   QK SRK MC
Sbjct:  150 EQLVSFDSHEEWNQMQSQDDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRAAYYQKKSRKKMC 252          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX2_RAT (Syntaxin-2 OS=Rattus norvegicus GN=Stx2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 39/116 (33.62%), Postives = 67/116 (57.76%), Query Frame = -2
Query:  337 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIM-DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR--KWM 675
            +TG+   +E +++++E+G         I +    QI    L EI+ RH  +  LE  + EL ++F+DMA+ V+ QG+M++NIE  V ++VD+V+      +KA K Q  +R  KW+
Sbjct:  156 ITGRTTTDEELEEMLESGKPSIFISDIISDS---QITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRKKWI 268          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX7_BOVIN (Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 37/114 (32.46%), Postives = 69/114 (60.53%), Query Frame = -2
Query:  334 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 675
            V+G   +E + ++ + + +S+   Q  +Q++   +  D L  IQER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  128 VSGGFPEESSKERNLVSWESQTQPQAQLQDEEITE--DDLRLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX1A_CAEEL (Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  343 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 675
            + GK+  +E ++++IE+G+     Q  I +    Q   TLA+I+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  A + V       +KA + Q  +R+
Sbjct:  156 IAGKQVGDEDLEEMIESGNPGVFTQGIITDTQ--QAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 264          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX1A_CAEBR (Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 38/111 (34.23%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  343 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 675
            + GK+  +E ++++IE+G+     Q  I +    Q   TLA+I+ RH+ +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  A + V       +KA + Q  +R+
Sbjct:  158 IAGKQVGDEDLEEMIESGNPGVFTQGIITDTQ--QAKQTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKARR 266          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX1A_BOVIN (Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 36/111 (32.43%), Postives = 64/111 (57.66%), Query Frame = -2
Query:  343 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 675
            +TG+    E ++ ++E+G+        I +    +    L+EI+ RH  +  LE  + EL  +F+DMA+LV++QG+M+D IE  V  +VD+V+   +  +KA K Q  +R+
Sbjct:  155 ITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARR 263          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX7_RAT (Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  334 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 603
            Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V SA  HVQ  N  L +A   Q+ SRK +C
Sbjct:  150 QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQRKSRKTLC 239          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX2_MOUSE (Syntaxin-2 OS=Mus musculus GN=Stx2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 38/116 (32.76%), Postives = 67/116 (57.76%), Query Frame = -2
Query:  337 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIM-DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR--KWM 675
            +TG+   ++ +++++E+G         I +    QI    L EI+ RH  +  LE  + EL ++F+DMA+ V+ QG+M++NIE  V ++VD+V+      +KA K Q  +R  KW+
Sbjct:  155 ITGRTTTDDELEEMLESGKPSIFISDIISDS---QITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRKKWI 267          
BLAST of DC887352 vs. ExPASy Swiss-Prot
Match: STX7_PONAB (Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 36/114 (31.58%), Postives = 66/114 (57.89%), Query Frame = -2
Query:  334 VTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 675
            V+G   ++ + ++ + + +S+   Q  +Q Q      D L  I ER  ++R LE  ++++ +IF D+ +++  QGD++D+IE+ V +A  HVQ  N  L +A   Q+ SRK +C
Sbjct:  128 VSGSFPEDSSKERNLVSWESQT--QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLC 239          
The following BLAST results are available for this feature:
BLAST of DC887352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
STX1A_MOUSE2.669e-1233.33Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3[more]
STX12_PONAB2.669e-1237.86Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1[more]
STX2_RAT3.486e-1233.62Syntaxin-2 OS=Rattus norvegicus GN=Stx2 PE=2 SV=2[more]
STX7_BOVIN4.553e-1232.46Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1[more]
STX1A_CAEEL4.553e-1234.23Syntaxin-1A homolog OS=Caenorhabditis elegans GN=u... [more]
STX1A_CAEBR4.553e-1234.23Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 P... [more]
STX1A_BOVIN4.553e-1232.43Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1[more]
STX7_RAT5.947e-1237.78Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4[more]
STX2_MOUSE7.767e-1232.76Syntaxin-2 OS=Mus musculus GN=Stx2 PE=2 SV=1[more]
STX7_PONAB1.014e-1131.58Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC887352 EIC Citrus sinensis cDNA clone EIC0250 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887352 ID=DC887352; Name=DC887352; organism=Citrus sinensis; type=EST; length=706bp
CATTTAAAAGCCAAACAAATTCAAATGTTACATAAAGTATGTCAAAGAAT
ATAGAAATATATACTTCAGTTAAAATCGCATGACACAGAGTTGACTTGAT
CAGAAAAGGGTGAGGGAGGGAAGGAAAGAGCTACAGGATTGGAATATGGA
ACTCAAATGACAGAAATTGGCGGGAAGGGTTAAAAAAAAGGAAAATGACC
ATTGACGGATTGACCAAAACACATATCTATACAAACAAATGTCGAGCAGC
TAAGCACCTTTGTTGCTACTCCATGGCTTGATTACCGCAACAACTATGAT
TGCAACAATGATGAGAAGGATGATGATGGCAATGCACATCCATTTCCTGG
AGTTCTTCTGTAGCTTTTTCGCCTTTTGGAGGGCAGTATTGCCTGACTGC
ACGTGATCTACAGCACTTGACACCTGAGATTCTATATTGTCCAGCATGTC
TCCCTGTGCATCTACCAACACCGCCATATCCAGAAAGATCTGTTGTAACT
CAAGAAGCTTCCTTTCCAAATCTCTAACGGCATCATGGCGTTCTTGAATT
TCAGCCAGAGTGTCCATTATCTGGCCTCGACCTTGTTCTTGGATTGCTTT
CTGGAATATCTGTTCACTGTCCCCGGTCTCAATCAATTGGTCAATTGTCT
CTTCATCAGCCCTTTTGCCGGTTACTGTATAAACTCGCCTCTCCACCACC
TCTCGA
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