DC887343

Overview
NameDC887343
Unique NameDC887343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.652e-36
Identity = 80/194 (41.24%), Postives = 124/194 (63.92%), Query Frame = -2
Query:  175 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRK 756
            F R+SGS+ ++ ++G G+  VR+LF  ARE AP IIF+DE+D+IG +R+ +   N + E  +T+ +LL ++DGF+ +  + +L ATNR D+LD ALLRPGR DR++    P+ + R  IL+IH++ + L   +DLK +A    G SGA+L  V  EA + A+R  R  V + D + AV K M    +K+  +R+
Sbjct:  202 FFRISGSDFIEMFVGIGASRVRDLFKQAREKAPGIIFIDELDAIGKSRLNAIHSNDERE--QTLNQLLVEMDGFDNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETDLDEAVEKTMIGLQKKSRVIRE 393          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.652e-36
Identity = 74/189 (39.15%), Postives = 120/189 (63.49%), Query Frame = -2
Query:  190 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 756
            F  +SGSE V+ ++G G+  VR+LF  A+ +AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  I ++ ATNR D+LD AL+RPGR DR++    P+   R +IL +H+R   L + +DL KIA +  G +GA+L  +  EA + A R     ++ ++   A+ +V+    +KN
Sbjct:  222 FFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQR-GAGLGGGNDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNLTEISMDEVNDAIDRVLAGPEKKN 409          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.528e-35
Identity = 74/182 (40.66%), Postives = 119/182 (65.38%), Query Frame = -2
Query:  211 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 756
            F  +SGSE V+ ++G G+  VR+LF  A+E+AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  + V+ ATNR DILD ALLRPGR DR++    P+ + R DILK+HS       G+ L+ IA +  G SGA+L  +  EA + A R  +  ++ ++ + ++ +++
Sbjct:  281 FFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR-GTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIV 461          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_CYAME (Cell division protease ftsH homolog OS=Cyanidioschyzon merolae GN=ftsH PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.312e-35
Identity = 72/182 (39.56%), Postives = 122/182 (67.03%), Query Frame = -2
Query:  211 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 756
            F  +SGSE V+ ++G G+  VR+LF  A+++AP ++F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  + V+ ATNR+D+LD ALLRPGR DR+I    P+ +SR+ ILK+H+ +  L   + L+ +A +  G +GA+L  +  EA + A+R     +T ++ + A+ +V+
Sbjct:  215 FFSISGSEFVEMFVGVGASRVRDLFKKAKQNAPCLVFIDEIDAVGRQR-GAGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRVDVLDAALLRPGRFDRQIMVSMPDVKSRIAILKVHANQKKLHPQVSLEAVARRTAGFAGADLANLLNEAAILAVRRGLKQITWKEIDDAIDRVI 395          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.631e-35
Identity = 81/197 (41.12%), Postives = 121/197 (61.42%), Query Frame = -2
Query:  166 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 756
            F  +SGS+ V+ ++G G+  VR++F  A++ AP IIF+DEID++G  R  +G G G  E ++T+ ++L ++DGFE +  I V+ ATNR D+LD ALLRPGR DR++    P+   R  ILK+H RR+ L   ID   IA    G SGA+L  +  EA +FA R  +  V+  +FE A  K+M     ++M + +  K
Sbjct:  213 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQK 408          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.631e-35
Identity = 81/197 (41.12%), Postives = 121/197 (61.42%), Query Frame = -2
Query:  166 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 756
            F  +SGS+ V+ ++G G+  VR++F  A++ AP IIF+DEID++G  R  +G G G  E ++T+ ++L ++DGFE +  I V+ ATNR D+LD ALLRPGR DR++    P+   R  ILK+H RR+ L   ID   IA    G SGA+L  +  EA +FA R  +  V+  +FE A  K+M     ++M + +  K
Sbjct:  213 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQK 408          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.631e-35
Identity = 77/189 (40.74%), Postives = 121/189 (64.02%), Query Frame = -2
Query:  190 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 756
            F  +SGS+ V+ ++G G+  VR+LF  A+++AP IIF+DEID++G  R  +G G G  E ++T+ +LL ++DGF A+  I ++ ATNR DILD ALLRPGR DR+I+   P+   R ++LK+H+R   L   ++LK IA +  G SGA+L+ +  EA + A R     ++    E A+ +V+    +K+
Sbjct:  227 FFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIAGPAKKS 414          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.631e-35
Identity = 82/188 (43.62%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  199 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE--RRIHVTQEDFEMAVAKVMKKET 756
            FI V G EL  K++GE  R VR++F  AR+ +PS+IF DEID++ + R E  S +      R +  LLN+LDG EA   + VL ATNR D++D AL+RPGR+DR +    PN E+R  I+KI + +M     +DL  IAEK  G SGAE+ A+C EAG+ A+ E      + Q  F+ A+  + K  T
Sbjct:  610 FIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANRGEDNSSD------RVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791          

HSP 2 Score: 106.686 bits (265), Expect = 1.439e-22
Identity = 62/161 (38.51%), Postives = 96/161 (59.63%), Query Frame = -2
Query:  268 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILK-IHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALR 747
            + G  +V KY+GE    +R++F  AR H PSIIF+DEID++   R E  S        R +  LL  LDG   + K+ V+ ATNR + +D+AL RPGR++++IE   P++ +RLDI+K + S   N +    L+ +A + +   GA+L AV  EA + A++
Sbjct:  344 IDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVS----EAESRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVREAALRAIK 500          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.355e-35
Identity = 81/197 (41.12%), Postives = 121/197 (61.42%), Query Frame = -2
Query:  166 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 756
            F  +SGS+ V+ ++G G+  VR++F  A++ AP IIF+DEID++G  R  +G G G  E ++T+ ++L ++DGFE +  I V+ ATNR D+LD ALLRPGR DR++    P+   R  ILK+H RR+ L   ID   IA    G SGA+L  +  EA +FA R  +  V+  +FE A  K+M     ++M + +  K
Sbjct:  213 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR-GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQK 408          
BLAST of DC887343 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.355e-35
Identity = 72/182 (39.56%), Postives = 118/182 (64.84%), Query Frame = -2
Query:  211 FIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVM 756
            F  +SGSE V+ ++G G+  VR+LF  A+++AP I+F+DEID++G  R  +G G G+ E ++T+ +LL ++DGFE +  + V+ ATNR DILD ALLRPGR DR++    P+   RL IL++H++   +   + L+ IA +  G SGA+L  +  EA +   R R+  +T  + + ++ +V+
Sbjct:  234 FFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQR-GTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEIDTSIDRVV 414          
The following BLAST results are available for this feature:
BLAST of DC887343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
FTSH_TREPA6.652e-3641.24Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH4_SYNY36.652e-3639.15Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH8_ARATH2.528e-3540.66Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH_CYAME4.312e-3539.56Cell division protease ftsH homolog OS=Cyanidiosch... [more]
FTSH_SALTY5.631e-3541.12Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI5.631e-3541.12Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_BACPF5.631e-3540.74Cell division protease ftsH homolog OS=Bacillus ps... [more]
AFG2_SCHPO5.631e-3543.62ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
FTSH_SHIFL7.355e-3541.12Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_PORPU7.355e-3539.56Cell division protease ftsH homolog OS=Porphyra pu... [more]

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Properties
Property NameValue
Genbank descriptionDC887343 EIC Citrus sinensis cDNA clone EIC0235 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887343 ID=DC887343; Name=DC887343; organism=Citrus sinensis; type=EST; length=757bp
GGAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTGGACTAATTCAGAACCAGAAACCCT
GATGAAA
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